RetrogeneDB ID:
retro_mputfur_1352
Organism:
Location:
GL897093.1:2748487-2748882 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.14 %
Coverage:
62.09 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
NT5C
Parental gene aliases:
No gene alias available
Parental gene description:
5', 3'-nucleotidase, cytosolic [Source:HGNC Symbol;Acc:17144]

Genomic region (view in browser)





>retro_mputfur_1352
GAAACCCAAGGCTTTTTCCTAGACTTGGAGCCAATCTCTGAAGCCTTGGAAACCATGCAG
GAGATGAACATGCTGGACACTGAAGCCTTCATCTGCAACAGCCCTCTGATAAAGTATGAA
TTGGGTGAGAAGTACCACTGGGTGGACAATCAGCTGGGGCCTCAGTCTGAGAGTGAGATA
GCCTGATGAGGGACAAGAGCATAGTCTTCGTGGACCTGATTGTTGGTAACAAAGACATCA
TTCAAAACCAAGAGTGACACATGTCTAAGACCCCAGTCTGGAAGCACATCTTGTTCACCT
GCTGCCATACCAGGATCTGGCCCTACCCCCTCACAAGGAGACAGTTGCTCTGCTGGAGTA
ACAGTTGGAGGCAGATCATAGACAGCAAGCAAGGG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EAPGFFLDLEPIPGAVEAMREMNNMQDTEVFICSSPLLKYEHCVGEKYRWVEKHLGPQFVERII-LTRDKTVVLGDLLIDDKDSIQGQE----QTPSWEH
E..GFFLDLEPI..A.E.M.EMN.M.DTE.FIC.SPL.KYE...GEKY.WV...LGPQ....I..L.RDK..V..DL....KD.IQ.QE.....TP.W.H
Retrocopy
ETQGFFLDLEPISEALETMQEMN-MLDTEAFICNSPLIKYE--LGEKYHWVDNQLGPQSESEIA/LMRDKSIVFVDLIVGNKDIIQNQE*HMSKTPVWKH


Parental protein
ILFTCCHN-QHLALPP-SRRRLLSWSDNWREIIESKRG
ILFTCCH..Q.LALPP..RR.LL.WS..WR.II.SK.G
Retrocopy
ILFTCCHT/QDLALPP\TRRQLLCWSNSWRQIIDSKQG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide