RetrogeneDB ID:
retro_mputfur_1355
Organism:
Location:
GL897093.1:3587993-3588258 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.84 %
Coverage:
78.07 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
PPDPF
Parental gene aliases:
No gene alias available
Parental gene description:
pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish) [Source:HGNC Symbol;Acc:16142]

Genomic region (view in browser)





>retro_mputfur_1355
ATGGCTGCCATCCCCTCCAGCATCTTCCTTGTGGCCATTCACAACTATCACCTGTAACCC
CTGGGTTCCCCTTCCAGTATTAGCTCCTGCAGAAGTGCTGAGTATCCTGGCAAATCATTC
TTCACCACATTGGTCTCCTCATGGCCCACCAGTGTCACTGGTGGGCAAGCTTCTTTTTAG
GGAAGTCTACTCTCCTATTCATGGCTACAGTGTTGGAGTCCCCAGAATGCTCAGAATCTT
CCCAGGCCTCCAGGGCACCATCACC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAAIPSSGSLVATHDYYRRRLGSTSSSSSCGSAECAGEA-IPHPPGLPKADPGHWWASFFFGKSTVPFMATVLESPERSEPPQAS-SGTIT
MAAIPSS..LVA.H.Y....LGS.SS.SSC.SAE..G...I.H..GL..A...HWWASFF.GKST..FMATVLESPE.SE..QAS..GTIT
Retrocopy
MAAIPSSIFLVAIHNYHL*PLGSPSSISSCRSAEYPGKS/ILHHIGLLMAHQCHWWASFFLGKSTLLFMATVLESPECSESSQAS/QGTIT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide