RetrogeneDB ID:
retro_mputfur_1363
Organism:
Location:
GL897097.1:2443569-2444226 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.69 %
Coverage:
82.95 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS3A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S3A [Source:HGNC Symbol;Acc:10421]

Genomic region (view in browser)





>retro_mputfur_1363
ATGGCGGTCGGCAAAAACAAGCGCCTTACGAAAGGCGGCAAAAAGGGAGCCAAGAAGAAA
GTGGTTGATCCATTTTCTAAGAAAGATTGGTATGATGTGAAAGCACCATCTATGTGTAAT
ATAAGAAATATTGGAAAAACATTAGTCACAAGAACTCAAGGAAACAAAATCGCTTCTGAT
GGCTTCAAGGGTCGTGTTTTTGAAGTGAGTCTTGCTGATCTGCAGAATGATGAAGCTGCA
TTCAGAAAATTCAAGCTAATTACTGAGGATGTTCAGGGCAAAAACTGCCTGACCAATTTC
TATGGCATGGATCTTACCCGGGACAAAATGTGCTCCATGGTCAAAAAATAGCAGACCATG
ATTGAAGCTCATGTTGACGTCAAGACTACTGATGGTTATTTGCTTCGTCTATTTTGGGTT
GGTTTTACTAAAAAACGCAATAATCAGATTTGGAAGACCTCTCACGCTCAGCATCAACAG
GTCCACCAAATTCGGAAAAAGATGATGGAGATCATGACCCGAGAGGTTCAGGCAAATGAC
TTGAAAGAAGTGGTCAAAAAATTGATTCCAGACAGCATTGGAAATGATATAGAAAAAGCT
TGTCAGTCTATTTATCCGCTCCATGATATCTTTGTTAGAAAAGTAAAAATGCTGGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNF
MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAP.M.NIRNIGKTLVTRTQG.KIASDG.KGRVFEVSLADLQNDE.AFRKFKLITEDVQGKNCLTNF
Retrocopy
MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPSMCNIRNIGKTLVTRTQGNKIASDGFKGRVFEVSLADLQNDEAAFRKFKLITEDVQGKNCLTNF


Parental protein
HGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKA
.GMDLTRDKMCSMVKK.QTMIEAHVDVKTTDGYLLRLF.VGFTKKRNNQI.KTS.AQHQQV.QIRKKMMEIMTREVQ.NDLKEVV.KLIPDSIG.DIEKA
Retrocopy
YGMDLTRDKMCSMVKK*QTMIEAHVDVKTTDGYLLRLFWVGFTKKRNNQIWKTSHAQHQQVHQIRKKMMEIMTREVQANDLKEVVKKLIPDSIGNDIEKA


Parental protein
CQSIYPLHDVFVRKVKMLK
CQSIYPLHD.FVRKVKML.
Retrocopy
CQSIYPLHDIFVRKVKMLE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide