RetrogeneDB ID:
retro_mputfur_1370
Organism:
Location:
GL897100.1:3229414-3230233 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.97 %
Coverage:
53.74 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
GPI
Parental gene aliases:
No gene alias available
Parental gene description:
glucose-6-phosphate isomerase [Source:HGNC Symbol;Acc:4458]

Genomic region (view in browser)





>retro_mputfur_1370
AGTAGGGGCGTGGAGGCTGCCCGGGATCGCATGTTCAGTGGCGAGAAGACCAACTTCACA
AAGGAACGGGCAGTGCTGCATGTGGCCTTGCGAAACCGGTCAAACACACCCATTCTGGTG
GATGGCAAGGATGTGATGCCAGAGGTCAACAGGGTCCTGGAGAAGATGAAGTCTTTCTGT
CAGCGCGTCCGCAGTGGCGAATGGAAGGGGTACTCGGGCAAGTCCATCACGGACGTCATT
AACATCGGCATTGGCGGCTCTGACCTGGGACCCCTCATGGTGACCGAAGCCCTTAAGCCG
TACTCTTCAGGAGGTCCCCGGGTTTGGTTTGTCTCCAACATCGACGGGACCCACATCGCC
AAAACTCTGGCCACCCTGAATCCTGAGTTGTCCCTGTTCATCATTGCCTCCAAGACCTTT
ACCACCCAGGAGACCATTACGAATGCAGAGATGGCAAAGGAGTGGTTTCTCCTGTCGGCC
AAGGACCCTTCTGCAGTTGCAAAGCACTTTGTTGCCCTGTCTACCAACACGTCCAAAGTG
ACGGAGTTTGGGATTGACCCTCAAAATATGTTCGAGTTCTGGGATTGGGTAGGAGGATGT
TACTCGCTGTGGTCAGCCATTGGACTCTCCATCGCACTGCATGTGGGATTTGACAACTTT
GAGCAGCTGCTCTCAGGGGCTCACTGGATGGACCAGCACTTCCGTACGATGCCCCTGGAG
AAGAACGCACGTGTCATCCTGGCCATGCTGGGCATCTGGTACATCAACTGCTTTGGGTGC
GAGATGCAGGCCATGCTGCCCTACGACCAGGGTTTGCAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SRGVEAARDRMFSGEKINFTEERAVLHVALRNRSNTPILVDGKDVMPEVNRVLEKMKSFCQRVRSGEWKGYSGKPITDVINIGIGGSDLGPLMVTEALKP
SRGVEAARDRMFSGEK.NFT.ERAVLHVALRNRSNTPILVDGKDVMPEVNRVLEKMKSFCQRVRSGEWKGYSGK.ITDVINIGIGGSDLGPLMVTEALKP
Retrocopy
SRGVEAARDRMFSGEKTNFTKERAVLHVALRNRSNTPILVDGKDVMPEVNRVLEKMKSFCQRVRSGEWKGYSGKSITDVINIGIGGSDLGPLMVTEALKP


Parental protein
YSSGGPRVWFVSNIDGTHIAKTLATLNPESSLFIIASKTFTTQETITNAETAKEWFLLSAKDPSAVAKHFVALSTNTSKVKEFGIDPQNMFEFWDWVGGR
YSSGGPRVWFVSNIDGTHIAKTLATLNPE.SLFIIASKTFTTQETITNAE.AKEWFLLSAKDPSAVAKHFVALSTNTSKV.EFGIDPQNMFEFWDWVGG.
Retrocopy
YSSGGPRVWFVSNIDGTHIAKTLATLNPELSLFIIASKTFTTQETITNAEMAKEWFLLSAKDPSAVAKHFVALSTNTSKVTEFGIDPQNMFEFWDWVGGC


Parental protein
YSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVILAMLGIWYINCFGCETQAMLPYDQYLH
YSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRT.PLEKNA.VILAMLGIWYINCFGCE.QAMLPYDQ.LH
Retrocopy
YSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTMPLEKNARVILAMLGIWYINCFGCEMQAMLPYDQGLH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide