RetrogeneDB ID:
retro_mputfur_1373
Organism:
Location:
GL897100.1:3213064-3213550 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.91 %
Coverage:
52.27 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RHBDL2
Parental gene aliases:
No gene alias available
Parental gene description:
rhomboid, veinlet-like 2 (Drosophila) [Source:HGNC Symbol;Acc:16083]

Genomic region (view in browser)





>retro_mputfur_1373
GAGGGAGGACCCAGGACAATGGCTGCTGACCATGATTTGGAGATGGAGGATATGAATCTG
AATATGGATAGAGACATGGAAGGAGAGCTGGAAGAAGAGAAGGAAATGAGAGAGGATGGT
GGACGTGAAGATCCCTTCAAGAGTAAAAAGGTCCATAGGGTTGTCTCGAAATGGATGCTT
CCTGAAAAGGTCCGAAGAACATACTTGGAGAGAGCTAACTGCCTCCCACCCCCTGTGTTT
ATCATCTCCGTCAGCCTTGCTGAGCTGGCGGTGTTTATTTACTATGCCGTGTGGAAGCCT
CAGAAACAGTGGATCACCCTGGACACAGGCATCCTGGAGAGTCCCTTTACCTACAATCCC
GAGAAGCGGGAGCAAGCCTGGAGGTCTGTCTCCTATATGCTGGTCCACGCTGGAGTTCAG
CACATCGTGGGGAATCTCATTATGCAGCTCGCTTTGGGTATTCCCTTGGAAATGGTCCAC
AAAGGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EGGPRTMAADHDLEMEDMNLNMDRDMEGELEEEQEMREDGGRE-AFKSKKVHRVVSKWMLPEKVRRTYLERANCLPPPVFIISVSLAELVVFIYYAVWKP
EGGPRTMAADHDLEMEDMNLNMDRDMEGELEEE.EMREDGGRE..FKSKKVHRVVSKWMLPEKVRRTYLERANCLPPPVFIISVSLAEL.VFIYYAVWKP
Retrocopy
EGGPRTMAADHDLEMEDMNLNMDRDMEGELEEEKEMREDGGREDPFKSKKVHRVVSKWMLPEKVRRTYLERANCLPPPVFIISVSLAELAVFIYYAVWKP


Parental protein
QKQWITLDTGILESPFTYNPEKREQAWRFVSYMLVHAGVQHIVGNLIMQLALGIPLEMVHKG
QKQWITLDTGILESPFTYNPEKREQAWR.VSYMLVHAGVQHIVGNLIMQLALGIPLEMVHKG
Retrocopy
QKQWITLDTGILESPFTYNPEKREQAWRSVSYMLVHAGVQHIVGNLIMQLALGIPLEMVHKG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide