RetrogeneDB ID:
retro_mputfur_1376
Organism:
Location:
GL897102.1:2879110-2879512 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
97.76 %
Coverage:
99.26 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
Histidine triad nucleotide binding protein 1 [Source:UniProtKB/TrEMBL;Acc:G9K4C0]

Genomic region (view in browser)





>retro_mputfur_1376
CGTCCACGCGGGAGGGAGGCTGAGATGGCAGATGAGATCGCCAAGGCTCTGGCCGCGCGG
CCTGGTGGCGACACAATCTTCGGGAAGATCATTCACAAGGAAATCCCAGCCAAAATCATT
TTTGAGGATGACCAGTGTCTTGCTTTCCATGACATTTCCCCTCAAGCACCAACTCATTTT
CTGGTGATACCCAAGAAACATATATCCCAGATTTCTGTAGCAGAAGATGATGATGAAAGT
CTTCTTGGACATTTAATGATTGTTGGCAAGAAATGTGCTGCTGATTTGGGCCTGAAGAAG
GGTTATCGAATGGTGGTGAATGAAGGTTCAGATGGGGCACAGTCTGTCTATCATGTTCAT
CTCCATGTTCTTGGAGGTCGGCAGATGAATTGGCCTCCTGGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RPRGREAEMADEIAKAQAARPGGDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLKK
RPRGREAEMADEIAKA.AARPGGDTIFGKII.KEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLKK
Retrocopy
RPRGREAEMADEIAKALAARPGGDTIFGKIIHKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLKK


Parental protein
GYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG
GYRMVVNEGSDG.QSVYHVHLHVLGGRQMNWPPG
Retrocopy
GYRMVVNEGSDGAQSVYHVHLHVLGGRQMNWPPG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide