RetrogeneDB ID:
retro_mputfur_1378
Organism:
Location:
GL897103.1:1955798-1956581 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.21 %
Coverage:
69.79 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1378
TGTGTGGTAATGAGAGATGCCAACACCAAGCATTCCAGAGGCTTTGGGTTTGTCACCTAT
GCTCCTGTGGAGGAGGTGAAGGCAGCCATGAACGCAAGGGCATACAAGGTGGGTGGAAGA
GTTGTGGAACCAAAGAGGGCTGTCTCAAGAGAAGATTCTCAAAGACCTGGTGCCCACTTA
ACTGTGAAAAAGATTTTTGTTGGTGGCATTGAAGAAGACACTGAAGAACATCATCTAAGA
GATGATTTAGAACAGTGTGGGAACATCCAAGAGATTGAGATCATGACTGACCGAGGCAGT
GGCAGAAAGAGGGGTTTTGCTTTTGTAACATTTGATGATCATGATTCTATAGACAAGATT
GTCATTCAAAAATACCATACTGTGAATGGCCACATCTGTGAAGTAAGGAAAGCACTCTCT
AAGCAAGAGATGGCTCATGCTTCACCCAGCCAAAGAGGTCGAAGTGGGTCTGGAAACTTT
GGTGGTGTTAATGGAGGTGGTTTTGGTGGGGATGACAACTTTGGTCATGGAGGAAACTTC
AGTTGTCGATGTGGCTTTGGTGGCAGTCAAGGTGGTGGTGGATATAGTGGCAGTGGGGAT
GGCTATAATGGATTTGGTAATGATGGTGGTTATGAAGGAGGCGGCCATGGTTACTCTGAA
GGAAGCAGAGGCTATGGAAGTGGTGGACAGGGTTATGGAAACCAGGGCAGTGGCTACGGT
GGTAGAGGCAGCTATGACAGCTGTAACAACAGAGGAGGCAGAGGCAGCAATGGCGGTGGT
AGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS
CVVMRD.NTK.SRGFGFVTYA.VEEV.AAMNAR..KV.GRVVEPKRAVSREDSQRPGAHLTVKKIFVGGI.EDTEEHHLRD..EQ.G.I..IEIMTDRGS
Retrocopy
CVVMRDANTKHSRGFGFVTYAPVEEVKAAMNARAYKVGGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIEEDTEEHHLRDDLEQCGNIQEIEIMTDRGS


Parental protein
GKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGD
G.KRGFAFVTFDDHDS.DKIVIQKYHTVNGH.CEVRKALSKQEMA.AS.SQRGRSGSGNFGG..GGGFGG.DNFG.GGNFS.R.GFGGS.GGGGY.GSGD
Retrocopy
GRKRGFAFVTFDDHDSIDKIVIQKYHTVNGHICEVRKALSKQEMAHASPSQRGRSGSGNFGGVNGGGFGGDDNFGHGGNFSCRCGFGGSQGGGGYSGSGD


Parental protein
GYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGGYGGGS
GYNGFGNDGGY.GGG.GYS.GSRGYGSGGQGYGNQGSGYGG.GSYDS.NN.GG.G..GGGS
Retrocopy
GYNGFGNDGGYEGGGHGYSEGSRGYGSGGQGYGNQGSGYGGRGSYDSCNNRGGRGSNGGGS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide