RetrogeneDB ID:
retro_mputfur_1379
Organism:
Location:
GL897103.1:2238231-2238596 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
62.1 %
Coverage:
58.57 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
HMGB2
Parental gene aliases:
No gene alias available
Parental gene description:
high mobility group box 2 [Source:HGNC Symbol;Acc:5000]

Genomic region (view in browser)





>retro_mputfur_1379
TTGGGCAATGGAAATGCTAAGAAGCCAAGTGGCAAAATGTCACCATATGCACTGTTTGTG
CAAACTTGCTGAGAGGAGCACAGGAAGCACCCAGATGCTTCAGTGAACCTCTCTGAGTGT
TCTAAGGAATGCTCTGAGGGGTGGAAGACCATGTCTGCTGAAGAGAAAGGAAAACTTGAA
GACATGACAAAGGCAGACAAGCCCTGTTCTGGAATAGAAATGAAAACTTATATTCCTCCT
GAAGGGGTACAAGAAAGAAGTTCAAGGATCCCACTGTACCCAGGAGGCCGCCTTCTGTTT
TTTTCTTGTTTTCTTCTGAGTATCGCCCCCAATTCCAAGGGGAACATCCCCGCCTATCCA
TTGGC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKG-DKKGKKKDPNAPKRPP
.G.G...KP.GKMS.YA.FVQTC.EEH.K.HPD.SVN..E.SK.CSE.WKTMSA.EK.K.EDM.K.DK.....EMK.Y.PP.G.....K.KDP..P.RPP
Retrocopy
LGNGNAKKPSGKMSPYALFVQTC*EEHRK-HPDASVNLSECSKECSEGWKTMSAEEKGKLEDMTKADKPCSGIEMKTYIPPEG/GTRKKFKDPTVPRRPP


Parental protein
SAFFLFCSEHRPKIKSEHPGLSIG
S.FFLF.SE.RP....EHP.LSIG
Retrocopy
SVFFLFSSEYRPQFQGEHPRLSIG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide