RetrogeneDB ID:
retro_mputfur_1384
Organism:
Location:
GL897106.1:1054382-1054862 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
80.62 %
Coverage:
76.92 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
RPL7
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L7 [Source:HGNC Symbol;Acc:10363]

Genomic region (view in browser)





>retro_mputfur_1384
CTTCAAAAGGCAAGGAGGAAGCTTATGCATGAAAATGCTAAGCGTTACCACAAGGAATAT
AGGCAGATGTACAGAACTAAGATTCAAATGGCGGAGATGGCAAGAAAAGCTGGCAACTTC
TGTGTTCCTGCGGAACCCAAGTTGGCGTTTGTCACCAGGATCAAAGGTATCAGTGGTGTT
AGCCCAAAAGTTCAAATGGTTTTGCAGCTTCTTCACCTTCACCAGATCCTCAATGGCACC
TTTGTCAAGCTCAACAAGGCTTCAGTTAACATGCTAAGGATTGTGCAACCATACACAGCA
TGGGGTTACCCAAACCTGAAGCCAGTGAATGAACTGATCTGCAAGAGTGGTTAAAGCAAA
ATCAACAAGAAGCGAATTGCCCTGAGAGATAATGTAGTGATTGCCTGATCTCTTGGCAAA
TATGGCATCATCTTCATGGAAGATCTGATTCATAAGATCTATACTGTTAGAAAACGTTTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIA
L.KARRKL..E.AK.YHKEYRQMYRT.I.MA.MARKAGNF.VPAEPKLAFV.RI.GI.GVSPKV..VLQLL.L.QI.NGTFVKLNKASVNMLRIV.PY.A
Retrocopy
LQKARRKLMHENAKRYHKEYRQMYRTKIQMAEMARKAGNFCVPAEPKLAFVTRIKGISGVSPKVQMVLQLLHLHQILNGTFVKLNKASVNMLRIVQPYTA


Parental protein
WGYPNLKSVNELIYKRGYGKINKKRIALTDNTLIARSLGKYGIICMEDLIHEIYTVGKRF
WGYPNLK.VNELI.K.G..KINKKRIAL.DN..IA.SLGKYGII.MEDLIH.IYTV.KRF
Retrocopy
WGYPNLKPVNELICKSG*SKINKKRIALRDNVVIA*SLGKYGIIFMEDLIHKIYTVRKRF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide