RetrogeneDB ID:
retro_mputfur_1386
Organism:
Location:
GL897106.1:2484258-2484728 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
79.87 %
Coverage:
76.21 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
BTF3
Parental gene aliases:
No gene alias available
Parental gene description:
basic transcription factor 3 [Source:HGNC Symbol;Acc:1125]

Genomic region (view in browser)





>retro_mputfur_1386
AAGATGAAAGAAACTATCATGAGCCAGGAGAAACTCCCCAAACTGCAAGCACAAGTGTGC
ATTGGTGGGAAAGGAACTGCTCACCGAAAGAAGAGGGTGGTTCATAAAACTGCTACAGCA
GATGATAAAAAACTTCAGTTCTCCTTAAAGAAGTCAGGGGTAAATAATTTCTCTAGTATT
GAAATGAATATGTTCACAAACCAAGGAACAGTGATGCACTTTAACAACCCCAAAGTTCAG
GCATTGCTGGCAGCAAACACTTTACCACCATTACAGGCCATGCTGAGACAAAGCAGCTGA
CAGAAATGCTACCCAGTATCTTAATTCAACTTGGTACAGACAGGCTGACTAGTTTAAGAA
GACTGGCTGAAGCTCTGCCCAAACAATCTGTGGATGGAAAAGCACCACCTGCTACCGGAG
AGGAGGAGGATGATGATGAAGCTCGGGATCTACAAGGTTTCTCTCCAGCG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QMKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANT-FT-ITGHAETK
.MKETIM.QEKL.KLQAQV.IGGKGTA.RKK.VVH.TATADDKKLQFSLKK.GVNN.S.I.E.NMFTNQGTV.HFNNPKVQA.LAANT.FT.ITGHAETK
Retrocopy
KMKETIMSQEKLPKLQAQVCIGGKGTAHRKKRVVHKTATADDKKLQFSLKKSGVNNFSSI-EMNMFTNQGTVMHFNNPKVQALLAANT/FTTITGHAETK


Parental protein
QLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEA
QLTEMLPSIL.QLG.D.LTSLRRLAEALPKQSVDGKAP.ATGE..DD........F..A
Retrocopy
QLTEMLPSILIQLGTDRLTSLRRLAEALPKQSVDGKAPPATGEEEDDDEARDLQGFSPA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide