RetrogeneDB ID:
retro_mputfur_1388
Organism:
Location:
GL897106.1:2730435-2730823 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.16 %
Coverage:
83.44 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
PIGP
Parental gene aliases:
No gene alias available
Parental gene description:
phosphatidylinositol glycan anchor biosynthesis, class P [Source:HGNC Symbol;Acc:3046]

Genomic region (view in browser)





>retro_mputfur_1388
AGACTGTCTAAAGCCACAGGTAAGCTAGTGGAAAATTCATCACCACCACTGCCAGAGGTA
TTTATGGCTTTGTTTTTTACATAAACTCTCATTTTCGCTTCATAGTTCTTATCTTGTAGG
CTTTTATTCCTGAATCTTGGCTAAATTCCTTAGGCTTGATCTGCTGGTCTCAAAAATATT
GGACAGTCGCACTGCCCACCTACCTGATCATTACTATAGTAATTGGTTACGGTACCCTCA
TTTGGAATAAACATGATGACTATCTTCATTCAACTCCACTCATACAATCATAGATAACAG
TGCTAAAAATCAAGTGCAGAGGAAATACTAAGAAAAGGCCATACCAGCATTAAGACATAT
TCCGATTAGTGAAGTAAACCAAACGTTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RLSKATGKMVENSPSP-LPERAIYGFVLFLSSQFGFLLYLVWAFIPESWLHSLGLTYWPQKYWAVALPVYLLITIVIGYVLL-FGINMMST-SPLNSIHT
RLSKATGK.VENS.SP....R.IYGFV....S.F.F......AFIPESWL.SLGL..W.QKYW.VALP.YL.ITIVIGY..L.FGIN.M.T.S..NS.HT
Retrocopy
RLSKATGKLVENS-SP/TTARGIYGFVFYINSHFRFIVLIL*AFIPESWLNSLGLICWSQKYWTVALPTYLIITIVIGYGTL\FGIN-MMT\SSFNSTHT


Parental protein
ITDDYAKNQRQKKYREEAIPALRDIPISEVNQMF
I.D..AKNQ.Q.KY.E.AIPALR.IPISEVNQ.F
Retrocopy
IIDNSAKNQVQRKY*EKAIPALRHIPISEVNQTF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide