RetrogeneDB ID:
retro_mputfur_1389
Organism:
Location:
GL897106.1:2589297-2589873 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
98.96 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
AKIRIN1
Parental gene aliases:
No gene alias available
Parental gene description:
akirin 1 [Source:HGNC Symbol;Acc:25744]

Genomic region (view in browser)





>retro_mputfur_1389
ATGGCGTGCAGGGCGACGTTGAAGCGGCCCATGGAGTTCGAGGCGGCGCTGCTGAGCCCT
GGTTCCCCGAAGCGGCGGCGCTGCGCCCCTCTGCCTGGCCCCACTCCGGGCCTCAGGCCC
CCGGACGCTGAGCCGCCGCCGCTTCTCCAGACGCAGACCCCACCGCCGACTCTGCAGCAG
CCCGCCCCACCCGGCAGCGAGCGGCGCCTTCCAACACCGGAACAAATTTTTCAGAACATG
AAACAAGAATATAGTCGTTATCAGAGGTGGAGACATTTAGAAGTAGTTCTTAACCAGAGT
GAAGCTTGTACTTCGGAAAGTCAGCCTCATTCCTCAGCACTCACGGCACCTAGTTCTCCA
GGTTCCTCCTGGATGAAGAAGGACCAGCCCACCTTTACCCTCCGACAAGTTGGAATAATA
TGTGAGCGTCTCTTAAAAGACTATGAAGATAAAATTCGGGAGGAGTATGAGCAAATCCTC
AATACCAAACTAGCAGAACAATATGAATCTTTTGTGAAATTCACACATGATCAGATTATG
CGACGATATGGGACAAGGCCAACAAGCTATGTGTCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MACGATLKRPMEFEAALLSPGSPKRRRCAPLPGPTPGLRPPDAEPPPLLQTQTPPPTLQQPAPPGSERRLPTPEQIFQNIKQEYSRYQRWRHLEVVLNQS
MAC.ATLKRPMEFEAALLSPGSPKRRRCAPLPGPTPGLRPPDAEPPPLLQTQTPPPTLQQPAPPGSERRLPTPEQIFQN.KQEYSRYQRWRHLEVVLNQS
Retrocopy
MACRATLKRPMEFEAALLSPGSPKRRRCAPLPGPTPGLRPPDAEPPPLLQTQTPPPTLQQPAPPGSERRLPTPEQIFQNMKQEYSRYQRWRHLEVVLNQS


Parental protein
EACTSESQPHSSALTAPSSPGSSWMKKDQPTFTLRQVGIICERLLKDYEDKIREEYEQILNTKLAEQYESFVKFTHDQIMRRYGTRPTSYVS
EACTSESQPHSSALTAPSSPGSSWMKKDQPTFTLRQVGIICERLLKDYEDKIREEYEQILNTKLAEQYESFVKFTHDQIMRRYGTRPTSYVS
Retrocopy
EACTSESQPHSSALTAPSSPGSSWMKKDQPTFTLRQVGIICERLLKDYEDKIREEYEQILNTKLAEQYESFVKFTHDQIMRRYGTRPTSYVS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide