RetrogeneDB ID:
retro_mputfur_1391
Organism:
Location:
GL897107.1:1345587-1346385 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
88.93 %
Coverage:
99.26 %
Frameshifts:
4
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1391
ATGGTGGATGACGCTGGTGCTGAGGGAGGGCCGAAGGGCCCAGGGTCCCTGGAATGGGAG
GCCGGGGCCGTTTCCGCAGAGGCTTCGCAGCGGCATCCGGGGTCAGGGCCGGGGCGGTGG
TTGCGGCCGGGGCCGAGGCCGTGGAGCTCACAGGGTCACGGCGGAGGACAAGGAGTGGAT
TCCCGTCACCAAGCTGGGCCGTCTGGTCAAGGACATGAAGATCAAGTCCCTGGCGGAGAT
CTATCTCTTCTCCCTGCCCATCAAGGAGTCTGAGATCATCGACTTCTTCCTGGGAGCCTC
CCTCAAAGATGAGGTCTTGAAGATCATGCCTGTGAAGAAGCAGACGCGCGCTGGCCAGCA
GACCAGGTTCAAGGCATTTGTCGCCATTGGAGATTACAATGGACACGTCGGTCTGGGTGT
CAAGTGCTCCAAGGAGGTAGCCACTGCCATCCGCGGGGCCATCATTCTGGCCAAGCTTTC
CATCGTCCCTGTGCGGCGAGGCTACTAGGGGAACAAGATTGGCAAGCCCTACACTGTCCC
ATGCAAAGTGACTGGCCGCTGTGACTCTGTGCTGGTGTGTCTCATCCCTGCCCCCCAGAG
GCACTGGCATTGTCTCTGCCCCTGTGCCCAAGACTGCTGATGATGGCCGGTATCGACGAC
TGCTACACCTCGGCCAGGAGCTGCACTGCCACCCTGGGGAACTTTGCCAAGGCTACTTTC
GAAGCCATCTCCAAGACCTACAGCTATCTCACCCCTGACCTCTGGAAGGAGACTGTGTTC
ACCAAGTCTCCCTATCAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MADDAGAAGGPGGPGG-PGMGGRGGFRGGFG-SGIRGRGRGRGRGRGRGRGARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFL
M.DDAGA.GGP.GPG..PGMGGRG.FR.GF..SGIRG.GRG.G.GRGRGRGA....AEDKEWIPVTKLGRLVKDMKIKSL.EIYLFSLPIKESEIIDFFL
Retrocopy
MVDDAGAEGGPKGPGS/PGMGGRGRFRRGFA/SGIRGQGRGGGCGRGRGRGAHRVTAEDKEWIPVTKLGRLVKDMKIKSLAEIYLFSLPIKESEIIDFFL


Parental protein
GASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPA
GASLKDEVLKIMPV.KQTRAGQ.TRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY.GNKIGKP.TVPCKVTGRC.SVLV.LIPA
Retrocopy
GASLKDEVLKIMPVKKQTRAGQQTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY*GNKIGKPYTVPCKVTGRCDSVLVCLIPA


Parental protein
-PRGTGIVSAPVPKK-LLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQ
.PRGTGIVSAPVPK..L.M.AGIDDCYTSAR.CTATLGNFAKATF.AISKTYSYLTPDLWKETVFTKSPYQ
Retrocopy
\PRGTGIVSAPVPKT\LMM-AGIDDCYTSARSCTATLGNFAKATFEAISKTYSYLTPDLWKETVFTKSPYQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide