RetrogeneDB ID:
retro_mputfur_1394
Organism:
Location:
GL897109.1:3150076-3151265 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
76.0 %
Coverage:
99.75 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1394
GGAAAGGAAAAGGCTCATATCAACATTGTTTTCATTGAACACATAGATTTGGGCAAATCT
ACCACTACTGGTCATCTGATCTACCAAAGTGGTGGGATCGACAAAAGAACTAATAGAAAA
ATTTGAGAAGGAGGTTGCTGAGATGGGAAGGGGCTCCTTCAAGTGTGACTGGGTCTTGGA
TAAACTGAAAGCTGAACATGAATGAGGTATCACTGTGGATATTGCCCTGAGGAAATTCGA
GACTGAGGAATGTTATATGACCATCATTGATCCTCCAGGACACAGAGACTGTATCAAAAA
CATGATTATAGGCACATCTCAGGCTGACCATGCTGTCCTGACTATTGTTGCCAGTGTTGA
TGAATTTGAAGCAGGTACCTCCAAGAATGGGCAGACCTTTGAGCATGCCCTTCTAGCTTA
CACACTGGGTGTGAAAACAACTAATTGCCAGTGTCAACAAAATGGATTTCACGGAACCAC
CCTATAGCCAGAAGAGACACAAATAAATCGTTAAGGAAGTCAACACCTACATTAAGAAAA
TTGGCTACAACACTGACACAGTAGCATCTGTGCCAATTTTTGGTTGGAATGGTGACAACG
TGCTAGAGCCAAGTGTTAACATGTCTTGGTTCAAGGGATGGAAAGTCACCCATACAGATA
GCAAAGCCAGTGGCACGATATGCTTCAAGCTCTGGATTGCATTCTGCCACCAGCTTGTCC
AACTGACAAGCCCTTGCTTCTGCCTCTCCAGGACATCTACAAAATTGGTGGTATTGATAC
TGTCCCTGTGGCCCAAGTGGAGACTGGTATTCTTAAAGCTGGCATGGTGGTCTCCTTTGC
TTCAGTCAGTGTCACAACTGAAGAAAAATCTGTTGAAATGCACCATGAAGTTTTGAGTGA
GACATTTGCTGGGGACAATGTAGACTTCAGTGACAAGAACATATGTGTCAGAGATGTTCG
TCCAGGCAATATGGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCAA
AGCTCACATGATTTTCCTGAACTATCTTGGCCAAATCAGTGCTGGGTATGCACCTGTGCT
GGATTGTCGCCTGGCTCATGTTGCTTGCAAGTTTTCTGAGGTGAAGAAGACTGATGATCG
TTTTGGAGAAAAGCTGGAAGACGGCCCCAAGTTCTTAAAATCTGATGAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRT-IEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIK
GKEK.HINIV.I.H.D.GKSTTTGHLIY..GGIDKRT.IEKFEKE.AEMG.GSFK..WVLDKLKAE.E.GIT.DI.L.KFET...Y.TIID.PGHRD.IK
Retrocopy
GKEKAHINIVFIEHIDLGKSTTTGHLIYQSGGIDKRT\IEKFEKEVAEMGRGSFKCDWVLDKLKAEHE*GITVDIALRKFETEECYMTIIDPPGHRDCIK


Parental protein
NMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVK-QLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGD
NMI.GTSQAD.AVL...A.V.EFEAG.SKNGQT.EHALLAYTLGVK.QLI..VNKMD.TEPPYSQKR...IVKEV.TYIKKIGYN.DTVA.VPI.GWNGD
Retrocopy
NMIIGTSQADHAVLTIVASVDEFEAGTSKNGQTFEHALLAYTLGVK\QLIASVNKMDFTEPPYSQKRHK*IVKEVNTYIKKIGYNTDTVASVPIFGWNGD


Parental protein
NMLEPSANMPWFKGWKVTRKDGNASGTT-LLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEA
N.LEPS.NM.WFKGWKVT..D..ASGT...L.ALDCILPP..PTDKPL.LPLQD.YKIGGI.TVPV..VETG.LK.GMVV.FA.V.VTTE.KSVEMHHE.
Retrocopy
NVLEPSVNMSWFKGWKVTHTDSKASGTI/MLQALDCILPPACPTDKPLLLPLQDIYKIGGIDTVPVAQVETGILKAGMVVSFASVSVTTEEKSVEMHHEV


Parental protein
LSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGD
LSE...GDNV.F..KN..V.DVR.GN.AGDSKNDPPMEAAGF.A..I.LN..GQISAGYAPVLDC..AH.ACKF.E.K.K.D.R.G.KLEDGPKFLKS.D
Retrocopy
LSETFAGDNVDFSDKNICVRDVRPGNMAGDSKNDPPMEAAGFKAHMIFLNYLGQISAGYAPVLDCRLAHVACKFSEVK-KTDDRFGEKLEDGPKFLKSDD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide