RetrogeneDB ID:
retro_mputfur_1396
Organism:
Location:
GL897111.1:2205510-2205823 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.26 %
Coverage:
66.67 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
SNRPC
Parental gene aliases:
No gene alias available
Parental gene description:
small nuclear ribonucleoprotein polypeptide C [Source:HGNC Symbol;Acc:11157]

Genomic region (view in browser)





>retro_mputfur_1396
ATGCCTCAGTTGTACGGTGACTACTGCATCACATACCTCACCCGTGAGTCTCATTCTGTG
ATGAAGACACACTGCCGTGGTAGGAAACACAAAGAGAATGCAAAAGCCTAATATCAGGAA
CAGATGGAAGAGCAGGCAGAGAGCCTGATCAACAAAACCACTGCATTTTGACAAGAAAAG
AGATCTGCTACTCTATCATCGCTCCTCCTCCGGCAGGGACAATGGTCCTACCTCGCGCCC
AGTCCCCCAGGCTCCTCACGCTGGTATGATCCCGGCACCCTCTACAGGGGACCCTTCCAT
GATGCCAATGATG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LSRFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFS-APPPAGAMI-PPPPSLPGPPRPGMMPAPHMG
....Y.DYC.TYLT..S.SV.KTHC.GRKHKEN.K..YQ..MEEQA.SLI.KTT.AF.Q.K...T..S.APPPAG.M..P.....P..P..GM.PAP..G
Retrocopy
MPQLYGDYCITYLTRESHSVMKTHCRGRKHKENAKA*YQEQMEEQAESLINKTT-AF*QEKRSATLSS/APPPAGTMV/PTSRPVPQAPHAGMIPAPSTG


Parental protein
GPPMMPMM
.P.MMPMM
Retrocopy
DPSMMPMM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide