RetrogeneDB ID:
retro_mputfur_1402
Organism:
Location:
GL897114.1:2882610-2883001 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.66 %
Coverage:
82.28 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
RPS11
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S11 [Source:HGNC Symbol;Acc:10384]

Genomic region (view in browser)





>retro_mputfur_1402
ATGACCAACATTCAGACTGAGTAGGCCCACCAAAAACACCCAACCATCTTTCAAAATAAG
AAGAGTGTCCTGCTATAGGAAATGGCAAGGAGGAGTTCCTGTGATACTACAAAAACATCA
GTCTGTACTTCAAGATGCTCAAGGAGGCCACCGAAGGCATGGATATTGACAAGAAATGCC
CCTTTCCTGGTGATGTCTCCCTCCGAGTATGGATTAGGTTTAGTGTGGTGACCCAGATGA
TGACAATGCAGAGGACCACTGTTATCCACCAAGACTACCACCACCACATCCAAAAGTACA
GCCACTGCGAGAAACACCACAAGAACATGTCTGTGAACCTGTCACCCTACTCAGGATTGT
CCAGATTGGGGATATTGTCACAGTGGGACAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MADIQTERAYQKQPTIFQNKKRVLLGE-TGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTK-MKMQRTIVIRRDYLHYIRK
M..IQTE.A.QK.PTIFQNKK.VLL.E..GKE....YYKNI.L.FK..KEA.EG..IDKKCPF.G.VS.R..I...VVT..M.MQRT.VI..DY.H.I.K
Retrocopy
MTNIQTE*AHQKHPTIFQNKKSVLL*E/NGKEEFL*YYKNISLYFKMLKEATEGMDIDKKCPFPGDVSLRVWIRFSVVTQMMTMQRTTVIHQDYHHHIQK


Parental protein
YNRFEKRHKNMSVHLSP-CFRDVQIGDIVTVGE
Y...EK.HKNMSV.LSP...R.VQIGDIVTVG.
Retrocopy
YSHCEKHHKNMSVNLSP/LLRIVQIGDIVTVGQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide