RetrogeneDB ID:
retro_mputfur_1406
Organism:
Location:
GL897117.1:1349277-1349850 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.7 %
Coverage:
96.08 %
Frameshifts:
5
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1406
GGGACACAGACCACTGCAGCCTTGTGGCCCTCAAGGAGGGCCCTTCTCACTCCATTTTGC
CTTCACTGGACTGGCCATCAGCTCACCCTGGAGCATGGTACAGAACTCAGGGATGCACAG
CCAAGCCAGGTCTCAGGATTCTAGCCTCCAGGAAAAATCTTGCCATGACTGATAGGGCCC
CAGATAAAAATTCAAACCTTCAACCTGTTCTCTTTTACATCCCTGAAAATGAATCACCAT
TGGAACAAAAGTTAAGAGAATTAAGACAAGCACAAAAATGGAACCAACAGTCTAGGCAAA
CCAGAATTTGACATTTTGTAAGGAAAAGGAAGAATTTATTAACTTATAACTAAAAGTTAA
AGGCCTGGGATGGAGAGCTAGATCAGGTAAAAAAGCAACATTACGTACAGAATAAATGGC
TGACTTTGGAAGGAACTTTTAGGTAAAAATTTTCAGAAGCACATTATTATAAAAGACTGG
TACAAGTGCAATTTTCCCATCACCTTCTTCATGGGAAAAATGGGCCTGGGGAGGGTTTGG
AACAAGCTTAAACCAAAACAAAAGAAGACTAGC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GTLAMAALRPSRRVLVPPLCRAFAGSGCQLAPERGAERRDTASGRVSGFCPP-RKSCHD-WIGP-PDKHSNLRPVHFYVPKNESPLEQKLRQLRQETQEW
GT...AAL.PSRR.L..P.C....G...QL..E.G.E.RD.....VSGF.PP..KSCHD..IGP.PDK.SNL.PV.FY.P.NESPLEQKLR.LRQ..Q.W
Retrocopy
GTQTTAALWPSRRALLTPFCLHWTGH--QLTLEHGTELRDAQPSQVSGF*PP\EKSCHD/LIGP/PDKNSNLQPVLFYIPENESPLEQKLRELRQ-AQKW


Parental protein
NQQFW-AKQNLTFRKEKEEFIRSRLKARGLDPRAGSGQKATLDAEEMADF-YKEFLSKNFLKHMYYNRDWYQRNFAITFCMGRVALERVWNKLRPKPKET
NQQ...A.QNLTF.KEKEEFI...LK..GL..RA.SG.KATL..E.MADF..KE.L.KNF.KH.....DWY..NF.ITF.MG...L.RVWNKL.PK.K.T
Retrocopy
NQQSR/ANQNLTFCKEKEEFINL*LKVKGLGWRARSGKKATLRTE*MADF/WKELLGKNFQKHIII-KDWYKCNFPITFFMGKMGLGRVWNKLKPKQKKT


Parental protein
A
.
Retrocopy
S


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide