RetrogeneDB ID:
retro_mputfur_1407
Organism:
Location:
GL897117.1:2886497-2887004 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
82.18 %
Coverage:
59.03 %
Frameshifts:
4
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1407
ACAAGAATGGTGGTACCCAAAATGCCTAGGTATCATCCTACTGAAGATGTGCCTCAAAAG
CTGTTGAGCCATGACAAAAAAACCTTTCAGTAAGCATGTGAGAAAACTGCAGCTAGCATC
ACCCCTGGGACCATTTTGATCATCCTCACTGGGCGTCACAGAGACAAAAGGGTAGTTTTC
CTGAAGCAAATGAGCAGTGGCTTGCTACGGGTGACTGGACCTCTGTCCCTCAATGGAGTT
CCCCTGTATAGAACACACCAAAAATTCGTCACATCCACTTCTACCAAAACTGATATCAGC
AGTGTGAAAATCCCCAAACATCTCACTGATGCTTATTTCAAAGAAGAAGAAGTTGTGGAA
GCCCAGACACCAGGAGAGTGAGATCTTTGACAGTGAGAAAGAGAAATACGCAATTACAGA
GCAATGCAAGGTGATCAGAAAACTGTGGACTCGCAAATTCTGCCAAAAATCAAGGCTGTT
TCTCAGCTTCAGGGCTGCCTCTGCTCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TRVVKLRKMPRYYPTEDVPRKLLSHGKK-PFSQHVRKLR-ASITPGTILIILTGRHRGKRVVFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKI
TR.V...KMPRY.PTEDVP.KLLSH.KK.PFS.HVRKL..ASITPGTILIILTGRHR.KRVVFLKQ.SSGLL.VTGPLSLN.VPL.RTHQKFV..TSTK.
Retrocopy
TRMV-VPKMPRYHPTEDVPQKLLSHDKK\PFSKHVRKLQ/ASITPGTILIILTGRHRDKRVVFLKQMSSGLLRVTGPLSLNGVPLYRTHQKFVTSTSTKT


Parental protein
DISNVKIPKHLTDAYF-KKKKLRKPRHQEGEIFDTEKEKYEITEQRKV-DQKAVDSQILPKIKAVPQLQGYLRS
DIS.VKIPKHLTDAYF.KKKKL.KPRHQE.EIFD.EKEKY.ITEQ.KV.DQK.VDSQILPKIKAV.QLQG.L.S
Retrocopy
DISSVKIPKHLTDAYF\KKKKLWKPRHQESEIFDSEKEKYAITEQCKV/DQKTVDSQILPKIKAVSQLQGCLCS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide