RetrogeneDB ID:
retro_mputfur_1410
Organism:
Location:
GL897118.1:1382367-1382883 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.8 %
Coverage:
92.02 %
Frameshifts:
3
Stop codons:
5


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1410
GGAATCAACATCCACCACAACAAGGACTGAAAGTTGCAGTGCCATGAGCCCAAGAGGCAG
GACATCTACCTGAGATGTTGGTCAAGTTGTACAGCTTTCTTGCTGGGTAAACCAACTCCA
CATTTAGGTGATTTGGGTTAGAGCGGTTGTTCATATGTTGCAGCAACTGTCTACCTCAGA
TGTAATCTTGGGTGATCCAGAGGATGAAGCTACCTGACCGGGAAATCAAAACAGCTGCTG
TTGTAGGTACCATAACTGATGATATGCATGCCCAGGAGGTGTCCAAACTGAAGGTGTGCA
CACTGAACATGAGCAGACGTGCCTGGAGGTGCGTCCTCAAAGTTGGGGCAAAAGCTTTAC
CTTTGACCAGTTGGCCTGGAGTCCCCCAAGGGCCATGGTACCATCTTGCTCTCCAGTCCA
GGCAAGGGCTGAGAGGTATCCAGGCCTTTCAGCAAGACCCCAGGAACCCTGCACAGCCAC
AAAAAACTCTATTTGCAATCTAAAGGCCAGAAGTAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GVDIRHNKDRKVRRKEPKSQDIYLR-LLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKV
G..I.HNKD.K....EPK.QDIYLR..LVKLY.FLA..TNSTF....L.RLF....N..P...S..I..MKLP.RE.KTA.VVGTITDD...QEV.KLKV
Retrocopy
GINIHHNKD*KLQCHEPKRQDIYLR/MLVKLYSFLAG*TNSTFR*FGLERLFICCSNCLPQM*SWVIQRMKLPDREIKTAAVVGTITDDMHAQEVSKLKV


Parental protein
CALRVSSRARSRILKAG-GKILTFDQLA-LDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKF
C.L..S.RA....LK.G.GK..TFDQLA.L.SPKG.GT.LLS.P.KG.EV.R.F.K.PGT.HSH.K.Y..SKG.K.
Retrocopy
CTLNMSRRAWRCVLKVG/GKSFTFDQLA/LESPKGHGTILLSSPGKG*EVSRPFSKTPGTLHSHKKLYLQSKGQKY


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide