RetrogeneDB ID:
retro_mputfur_1414
Organism:
Location:
GL897120.1:2777557-2778110 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
81.91 %
Coverage:
90.29 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
BTF3
Parental gene aliases:
No gene alias available
Parental gene description:
basic transcription factor 3 [Source:HGNC Symbol;Acc:1125]

Genomic region (view in browser)





>retro_mputfur_1414
GGCTGCTCCGCCCAAGACCCCCTGAGCGCCAACCCTAGTCCCCCGCACGGTCCCATTTCC
GCTCCAACAAGATGAAAGAAACTATCACGAACCAGGAGAAACTCGCCAAACTGCAAGCAC
AAGTGCGCATTGGTGGGAAAGGAACTGCTCGCCGAAAGAAGAAGGTGGTTCATAGAACAC
AGCAAATGATAAATAACTTCAGTTCTCATTAAAGAAGTTAGGGGTAAACAATATCTCTGG
TATTGAAGAAGTGACTATGTTCACAAACCAAGGAACAGTGATCCACTTTAACAACCCCAA
AGTTCAGGCATCGCTGGCAGCGAACACTTTCACCATTATAGGCCATGCTGAGACAAAGCA
GCTGACAGAAATGCTACCCAGTATCTTAAACCAACTTGGTGCAGACAGTCTGACTAGTTT
AAGAAGACTGGCTGAAGCTCTGCCCAAACAATCTGTGGATGGAAAAGCACCACTTGCTAC
CGGAGAGGATGATGATGATGAAGTTCCACATCTTGTGGAGAATTTTGATGACGCTTCCAA
GAATGAAGCAAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GCPGGEATPSLPPPRGG-TRGQEPQMKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTA-TADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHF
GC.........P.P..G........MKETI.NQEKLAKLQAQVRIGGKGTARR.KK.V.....TA.DK.LQFSLKKLGVNNISGIEEV.MFTNQGTVIHF
Retrocopy
GCSAQDPLSANPSPPHG/SHFRSNKMKETITNQEKLAKLQAQVRIGGKGTARR-KKKVVHRT/TANDK*LQFSLKKLGVNNISGIEEVTMFTNQGTVIHF


Parental protein
NNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN
NNPKVQASLAANTFTI.GHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVP.LVENFD.ASKNEAN
Retrocopy
NNPKVQASLAANTFTIIGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPHLVENFDDASKNEAN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide