RetrogeneDB ID:
retro_mputfur_1415
Organism:
Location:
GL897122.1:2329863-2330437 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.71 %
Coverage:
51.62 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
PPID
Parental gene aliases:
No gene alias available
Parental gene description:
peptidylprolyl isomerase D [Source:HGNC Symbol;Acc:9257]

Genomic region (view in browser)





>retro_mputfur_1415
TTATCAACAGTTCCAAATCCTCATTTGGAGGGGAGAAATACGGTATTTGGTCAAGTAATT
TAAAAAATGGGTGTGGCAAGGATACTGGAAAATGCAGAAGTGAAAGGTGAAAAACCTGCC
AAAATATGTGTTATTACAGAATGCAGAAAACTAAAGGAGGGAGATCATTGGGGTATATTC
CCAAATGATGGTTCTGGTGACAGTCACCCAGATTTATTTGAAGAAGCAGATATATACTTA
AAATATGTAGATAAAATTTTGCTAATAAGAGAAGACTTTAAAAAATTGGAAATATATTTT
TTTCAAATCCCAGAACTGGGAGATAGCTAATAAAAAAATATACAAAACCTTTAAGATATG
TAGAAGATTCAAAGGCTGTTATTAGGAAAGCAGATGGATTGAAGCTACAACCTATAGCTC
TAAGCTGTGTGCCAAATATTGGAGCTAATTAACAGAAGATGTCAAATTGGCAGGCAGCAA
TTGACAGTTGTTTGGAGGCACTTGAAATAGACCCATCAAATACCAAAACATTGTACCATA
AACTCAAGGATGGCAAGTATTAAAAGAATAGGAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ITTVPTPHLDGKHVVFGQVIKGMGVARILENVEVKGEKPAKLCVIAECGELKEGDDWGIYPKDGSGDSHPDFPEDADIDLKDVNKILLIAED-VKNIGNT
..TVP.PHL.G...VFGQVI..MGVARILEN.EVKGEKPAK.CVI.EC..LKEGD.WGI.P.DGSGDSHPD..E.ADI.LK.V.KILLI.ED..KN....
Retrocopy
LSTVPNPHLEGRNTVFGQVI*KMGVARILENAEVKGEKPAKICVITECRKLKEGDHWGIFPNDGSGDSHPDLFEEADIYLKYVDKILLIRED\LKNWKYI


Parental protein
FFKSQNWEMA-IKKYTKVLRYVEGSKAVIEQADRSKLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALELDPSNTKALYRR-AQGWQGLKEYD
FFKSQNWE.A.IKKYTK.LRYVE.SKAVI..AD..KLQPIALSCV.NIGA...KMSNWQ.AIDSCLEALE.DPSNTK.LY....QGWQ.LKE.D
Retrocopy
FFKSQNWEIA\IKKYTKPLRYVEDSKAVIRKADGLKLQPIALSCVPNIGAN*QKMSNWQAAIDSCLEALEIDPSNTKTLYHK/TQGWQVLKE*D


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide