RetrogeneDB ID:
retro_mputfur_1417
Organism:
Location:
GL897122.1:6990-7345 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
77.69 %
Coverage:
91.54 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS15A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S15a [Source:HGNC Symbol;Acc:10389]

Genomic region (view in browser)





>retro_mputfur_1417
ATGGTGCACATGAATGTCCTGACAGATGTCTCAAAAGTACTAACTAAGCTGAAAAGAGAA
GCAAACACCATGTTCTTATTAGGCCTTGCTCCAAAGTCATCAACTGGTTTCTAAATGTGA
TGGTGAAGCATGGTTACACTGGTGAATTTGAAATCACATATGATCACAGAGCTGGGAAAA
TTGTTGTGAACCTCACAGGCAGGTTAAACAAGCATGGAGTGATCAGCCCAGATTTGATGT
TCAACACAAAGATCTAGAAAAATGGCAGAACAATCTGCTCCCATCCTGCCAGTTTCATTT
CATTGTACTGATAACTGCAGCTGGAATCATGGATCATGAAGACCTAGAGGGAAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVRMNVLADA-LKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVIS-PRFDVQLKDLEKWQNNLLPSRQ
MV.MNVL.D..LKS.N.AEKR.K..VLIRPCSKVI..FL.VM.KHGY.GEFEI..DHRAGKIVVNLTGRLNK.GVIS.PRFDVQ.KDLEKWQNNLLPS.Q
Retrocopy
MVHMNVLTDV/LKSTN*AEKRSKHHVLIRPCSKVINWFLNVMVKHGYTGEFEITYDHRAGKIVVNLTGRLNKHGVIS/PRFDVQHKDLEKWQNNLLPSCQ


Parental protein
FGFIVLTTSAGIMDHEEARRK
F.FIVL.T.AGIMDHE....K
Retrocopy
FHFIVLITAAGIMDHEDLEGK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide