RetrogeneDB ID:
retro_mputfur_1422
Organism:
Location:
GL897126.1:176740-177739 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
97.0 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1422
ATGGTGAAGGTCAGAGTGAATGGATTTGGCTGTATTGGGCGCCTGGTCACCAGGGCTGCT
TTTAACTCTGGTAAAGTGGATATTGTCGCCATCAATGACCCTTTCATTGATCTCAACTAC
ATGGTCTACATGTTCCAGTATGATTCTACCCATGGTAAATTCCACGGCACAGTCAAGGCT
AAGAACGGGAAGCTTGTCATCAATGGGAAGTCCATCTCCATCTTCCAGGAGCGAGATCCT
GCCAACATCAAATAGGGCGATGCTGGTGCTGAGTATGTTGTGGAGTCCACTGGGGTCTTC
ACCACCATGGAGAAGGCTGGGGCTCACTTGAAGGGCGGGGCCAAGAGGGTCATCATCTCT
GCTCCTTCTGCTGATGCCCCCATGTTCGTGATGGCTGTGAACCATGAGAAGTATGACAAC
TCCCTCAAGATTGTCAGCAATGCCTCCTGTACCACCAACTGCTTGGCTCCTCTGGCCAAG
GTCATCTATGACAACTTCGGCATTGTGGAGGGACTCATGACCACCGTCCATGCCATCACT
GCCACCCAGAAGACTGTGGACGGCCCCTCTGGGAAGCTGTGGCGTGACGGCCGAGGGGCT
GCCCAGAACATCATCCCTGCTTCCACTGGTGCGGCCAAGGCAGTAGGCAAGGTCATCCCT
GAGCTGAATGGGAAGCTCACTGGCATGGCCTTCCGTGTCCCCACCCCCAACGTATCTGTT
TTGGATCTGACCTGCTGCCTGGAGAAAGCTGCCAAATATGATGACATCAAGAAGGTGGTG
AAGCAGGCATCAGAGGGCCCCCTTAAGGGCATCCTGGGGTATACTGAGGACCAGGTTGTC
TCCTGTGACTTCAACAGTGACACCCACTCCTCTACCTTCGATGCTGGGGCAGGCATTGCT
CTCAATGACCACTTTGTCAAGCTCATTTCCTGGTATGACAATGAATTTGGCTACAGCAAC
TGGGTGGTGGACCTTATGGTCCACATGGCCTCCAAGGAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKAENGKLVINGKSISIFQERDPANIKWGDAGAEYVVESTGVF
MVKV.VNGFG.IGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF.GTVKA.NGKLVINGKSISIFQERDPANIK.GDAGAEYVVESTGVF
Retrocopy
MVKVRVNGFGCIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAKNGKLVINGKSISIFQERDPANIK*GDAGAEYVVESTGVF


Parental protein
TTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGA
TTMEKAGAHLKGGAKRVIISAPSADAPMFVM.VNHEKYDNSLKIVSNASCTTNCLAPLAKVI.DNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGA
Retrocopy
TTMEKAGAHLKGGAKRVIISAPSADAPMFVMAVNHEKYDNSLKIVSNASCTTNCLAPLAKVIYDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGA


Parental protein
AQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
AQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV.DLTC.LEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
Retrocopy
AQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVLDLTCCLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA


Parental protein
LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE
LNDHFVKLISWYDNEFGYSN.VVDLMVHMASKE
Retrocopy
LNDHFVKLISWYDNEFGYSNWVVDLMVHMASKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide