RetrogeneDB ID:
retro_mputfur_1425
Organism:
Location:
GL897127.1:1878882-1879355 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.12 %
Coverage:
61.63 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
SNF8
Parental gene aliases:
No gene alias available
Parental gene description:
SNF8, ESCRT-II complex subunit [Source:HGNC Symbol;Acc:17028]

Genomic region (view in browser)





>retro_mputfur_1425
TTGCATTGCCGCGGGGTGGGAGCTGTACCCATTGCCAAGAAGCTTGCAGAGGCCAAGTTT
AAGGAGCGAGGAACTCTCCTGGCTGAAGCCCAGCTGGCCCAGATGTCCACACAGTTGGGC
ATGTTCAAGACCAACCTGGAGGCATTTGCCAGTAAACACAAGCAGGAGATCCGAAAGGAA
CCTGAGTTCCCGATGTAATTCCCGGACACATGTGTCACCCTTGCGTGGGTCGGCTCCCCT
CTGGAAGAGGATTTTGGTCTGCGGTGGGGGCTGAGGGAGCTTTCTGTTGCGACCTGGGGA
TCCAGAAGATGGACGTGTATGTGGCCCCGATGCCCGGGAAGGGAGGTCTGTTCACTCTGG
AGGGACTACGGCAAGACGTGTCCAAGGGAAGGGGCTGATTCGCCCAGGGTGTCAGCCATG
ACCGTTTGATCAGGGCCATGAAGAAACAAGAGGCACTTGGCACTGGCGCAGGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKSNLEEFASKHKQEIRKNPEFRVQFQDMCATIG-VDPLASGKGFWSEMLGVGDFYYE
.H.RGVGA..IAKK.LAEAK.KERGT.LAE.QLAQMS.QL.MFK.NLE.FASKHKQEIRK.PEF...F.D.C.T...V..L.SG.GFWS.....G.F...
Retrocopy
LHCRGVGAVPIAKK-LAEAKFKERGTLLAEAQLAQMSTQLGMFKTNLEAFASKHKQEIRKEPEFPM*FPDTCVTLA/VGRLPSGRGFWSAVGAEGAFCCD


Parental protein
LGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFG
LG.Q...V..A.....GGL.TLE.L.Q.V.KGRG.FAQ.VS.D.LIRA.KK..ALGTG.G
Retrocopy
LGIQKMDVYVAPMPGKGGLFTLEGLRQDVSKGRG*FAQGVSHDRLIRAMKKQEALGTGAG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide