RetrogeneDB ID:
retro_mputfur_1426
Organism:
Location:
GL897127.1:1938380-1938787 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
61.87 %
Coverage:
99.27 %
Frameshifts:
3
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL28
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L28 [Source:HGNC Symbol;Acc:10330]

Genomic region (view in browser)





>retro_mputfur_1426
ACTGTCCACCTGCAGTGGACGGTCGTCCTGAACTGCCCCAGCTTCCCGATCACAGGAGCA
GACAGGCAGACAGCACCGAACCCAGGAACCCGAAGGCTCGCAACTCCTTCCGCTACAACC
AGCGGATTCAGCGTTAAGACTGGGGGTGTGGGGCCCATGGTCAGTGACAAAGGTCTAGTG
GTGCTCGGGAAGCAGAGATCCGGCCACAGAAAGCTTGCCGCTTCCTACGTGCGACCACCA
TTAACAAGAACGCCCGGGCCACCGTCAGCGGCATCAGGTACACGATCCCCGAGAACGAGT
CCGGCCCACATCTCCGCATGACGGCCACTCGCAGCGCCCGAGCCATCCTGCTCAGCCAGA
AGCCTGTGATGGGGAAGGGCCCGTGGGCCCACCCCACCAAGAGCTCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SAHLQWMVVRNCSSFLIK-RNKQTYSTEPNNLKARNSFRYNGLIHR-KTVGVEPAADGKGVVVVMKRRSGQRKPATSYVR-TTINKNARATLSSVRHMIR
..HLQW.VV.NC.SF.I..R..Q..STEP.N.KARNSFRYN..I.R.KT.GV.P....KG.VV..K.RSG.RK.A.SYVR.TTINKNARAT.S..R..I.
Retrocopy
TVHLQWTVVLNCPSFPIT/RSRQADSTEPRNPKARNSFRYNQRIQR\KTGGVGPMVSDKGLVVLGKQRSGHRKLAASYVR/TTINKNARATVSGIRYTIP


Parental protein
KNKYRPDLRMAAIRRASAILRSQKPVMVKRKRARPTKSS
.N...P.LRM.A.R.A.AIL.SQKPVM.K...A.PTKSS
Retrocopy
ENESGPHLRMTATRSARAILLSQKPVMGKGPWAHPTKSS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide