RetrogeneDB ID:
retro_mputfur_1430
Organism:
Location:
GL897130.1:1577925-1578356 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.47 %
Coverage:
60.25 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
mRNA turnover 4-like protein [Source:UniProtKB/TrEMBL;Acc:G9KBH2]

Genomic region (view in browser)





>retro_mputfur_1430
AAATCCAACCACAACAAGAAAGTTTCCTTAACCAAAACTGCCAAGAAAGGCTTAGAACTG
AAACGGAACCTGATAGAAGGGCTTTGGAAATGTGCAGACATATACAAGTACCTTTTCTTC
TTCTCTGCGGCTAACATGAAGAACAGGAAGCTGAAAGACATCGCAATACCTGGAAGCACA
GCCAGATGTTCTTTGGCAAAAACAGGTGATGATGGTGGCCTTGGCTTGAAGCCCATCTGG
CGAGTACAAAGACAACCTGCATCAGGTCAGCAAGAAGTTGAGGAGTGGAGGTGGGTCTCC
TTTTCACCAACCACACCAGGGAGGAAGTGAATGAATGCTTTACAAAATACACAGAAATGG
ACTTCACTCAAGCTGGAAACAAAGTAACTTTCACTGTGACTTCTGGAGCAGTTCCCCACT
CCATGGATCCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFLFSVANMRNSKLKDI-RSAWKHSRMFFGKNK-VMMVALGRSPADEYKDNLHQVSKKLRG-E
KS...KKVSLTKTAKKGLELK.NLIE.L.KC.D.YKYLF.FS.ANM.N.KLKDI.R..WKHS.MFFGKN..VMMVAL..SP..EYKDNLHQVSKKLR..E
Retrocopy
KSNHNKKVSLTKTAKKGLELKRNLIEGLWKCADIYKYLFFFSAANMKNRKLKDI/RNTWKHSQMFFGKNR/VMMVALA*SPSGEYKDNLHQVSKKLRS\E


Parental protein
VGLLFTNRTKEEVNEWFTKYAEMDFARAGNKATFTVTLDPGPLEQFP
VGLLFTN.T.EEVNE.FTKY.EMDF..AGNK.TFTVT....P....P
Retrocopy
VGLLFTNHTREEVNECFTKYTEMDFTQAGNKVTFTVTSGAVPHSMDP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide