RetrogeneDB ID:
retro_mputfur_1437
Organism:
Location:
GL897135.1:1733067-1733725 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
97.27 %
Coverage:
79.93 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
CCDC28A
Parental gene aliases:
No gene alias available
Parental gene description:
coiled-coil domain containing 28A [Source:HGNC Symbol;Acc:21098]

Genomic region (view in browser)





>retro_mputfur_1437
GCTTCGGAGGCTTCGGGGTCTTTGCAGTTTGAGAAAGAGGACCCCGATCCTCTCCTTCCT
CAGGTTTTAAGAAGCTGGCCTTGGTGCAGTAAGGAGCTTAGAACAATGGAGGAACGGAAA
GTGAAGAGGAGGAGTCCTAAGTCTTTTAGTGTCCACTCTACTCAGGTGGTTAATGCCCCA
AAAAAATACCATTCCAGTTAGTAAAAGCACAGGGTTTTCAAATCCTGCATCACAGTCAAC
TTCACAGCGACCAAAGTTAAAAAGAGTGATGAAAGAAAAGACCAGACCTCAGGGTGGAGA
AGGAAAATGTGCACAACCGACTCCTATTCAGCACTCCTTCCTCACCGACGTCTCAGACGT
TCAGGAGATGGAGAGAGGGCTTCTCAGCCTTTTGAATGATTTCCACTCTGGAAAACTTCA
AGCATTCGGAAATGAATGTTCCATTGAACAGATGGAACATGTTCGGGGAATGCAGGAGAA
ATTAGCTCGCTTGAATTTGGAGCTCTATGGGGAGTTAGAGGAACTTCCTGAGGATAAGAG
AAAAACAGCCAGTGACTCCAATCTGGACAGGCTTCTGTCTGACTTAGAAGAACTGAATTC
TTCCATACAAAAGCTACATTTGTCTGATGCACAAGATGTTCCAAATACTTCCACCAGC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ASEASGSLQFEKEDPDPLLPQVLRSWPWCSKELRTMEERKVKRRSPKSFSAHSTQVVNA-KKNAIPVSKSTGFSNPASQSTSQRPKLKRVMKEKTRPQGG
ASEASGSLQFEKEDPDPLLPQVLRSWPWCSKELRTMEERKVKRRSPKSFS.HSTQVVNA..KN.IPVSKSTGFSNPASQSTSQRPKLKRVMKEKTRPQGG
Retrocopy
ASEASGSLQFEKEDPDPLLPQVLRSWPWCSKELRTMEERKVKRRSPKSFSVHSTQVVNA\QKNTIPVSKSTGFSNPASQSTSQRPKLKRVMKEKTRPQGG


Parental protein
EGKGAQPTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPEDKRKTASDSNLDRLLSDLEELN
EGK.AQPTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPEDKRKTASDSNLDRLLSDLEELN
Retrocopy
EGKCAQPTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPEDKRKTASDSNLDRLLSDLEELN


Parental protein
SSIQKLHLADAQDVPNTSTS
SSIQKLHL.DAQDVPNTSTS
Retrocopy
SSIQKLHLSDAQDVPNTSTS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide