RetrogeneDB ID:
retro_mputfur_1444
Organism:
Location:
GL897137.1:1350069-1350505 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
91.89 %
Coverage:
88.96 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
BTF3L4
Parental gene aliases:
No gene alias available
Parental gene description:
basic transcription factor 3-like 4 [Source:HGNC Symbol;Acc:30547]

Genomic region (view in browser)





>retro_mputfur_1444
AGATTTACCAACAGCATGAATCAAGAAAAGTTAGCCAAACTTCAGGCTCAGGTCCGGATA
GGGGGCAAGGGTACAGCTCGCAGAAAGAAGAAGGTGGACATAGAACAGCTACAGCTGATG
ACAAAAAACTCCAGAGTTCTCTAAAAAAAAACTGGCTGTGAATAATATAGCTGGTATTGA
AGAGGTGAACATGATTAAAGACGATGGGACAGTTATTCATTTCAACAATCCCAAAGTCCA
AGCTTCCCTTTCTGCTAACACCTTTGCAATTACTGGTCATGCAGAAGCCAAACCAATCAC
AGAAATGCTTCCTGGAATATTAAGTCAGCTTGGTGCTGACAGCTTAACAAGTCTTAGGAA
GTTAGTTGAACAATTCCCACGGCAAGTGTTGGATAGCAAAGCACCAAAACCAGAAGACAT
TGATGAAGAGGATGAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RFTNSMNQEKLAKLQAQVRIGGKGTARRKKKVV-HRTATA-DDKKLQS-SLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAK
RFTNSMNQEKLAKLQAQVRIGGKGTARRKKKV..HRTATA.D.K...S.S...LAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAK
Retrocopy
RFTNSMNQEKLAKLQAQVRIGGKGTARRKKKVD/HRTATADDKKLQSS/SXXXLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAK


Parental protein
PITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDD
PITEMLPGILSQLGADSLTSLRKL.EQFPRQVLDSKAPKPEDIDEEDD
Retrocopy
PITEMLPGILSQLGADSLTSLRKLVEQFPRQVLDSKAPKPEDIDEEDD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide