RetrogeneDB ID:
retro_mputfur_1447
Organism:
Location:
GL897139.1:2277313-2277727 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
70.83 %
Coverage:
100.0 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
POMP
Parental gene aliases:
No gene alias available
Parental gene description:
proteasome maturation protein [Source:HGNC Symbol;Acc:20330]

Genomic region (view in browser)





>retro_mputfur_1447
ATGAATGTCAGAGAACTTAGATCTCAGTTAAAGGACAGTGTTCCAATTATTGAACTTTCA
ACCAGTGGACCTTTTGAAAGCCATGATCATCTTCAAAAGGTTTTCCTTGTATGAAAACGA
ACTTTCACCCAATCATCTTCTTGAATTATCAGAAAATAATTTCCAGCTCAACCAAGCTAA
AATAAATTTTTCCACACTGAGAACACCCATGGTCTATTTGCTCCACTAAAATTTCAAATG
AAGTTCAAGGTTGTGTAGCAGGTTTAGCTTCTATTTCTTCCAAGATCAAACCTTTCATTG
GATATTCTGAAGAGTAATGATGGGACTACTGGATTTGAAGATATTCTTGACCTGTCACAA
AATAAACTAATGGAAGAACCATACTTGATGGTGAAATATAAGCTCGGTTTTCTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MNARGLGSQLKDSIPVTELSASGPFESHDLLR-KGLPCVK-NELLPSHPLELSEKNFQLNQDKMNFSTLR-NIQGLFAPLKLQMEFKAVQQVQRLPFLPS
MN.R.L.SQLKDS.P..ELS.SGPFESHD.L..KG.PC.K.NEL.P.H.LELSE.NFQLNQ.K.NFSTLR.N..GLFAPLK.QM.FK.V.QV..L.FLP.
Retrocopy
MNVRELRSQLKDSVPIIELSTSGPFESHDHLQ/KGFPCMK/NELSPNHLLELSENNFQLNQAKINFSTLR/NTHGLFAPLKFQMKFKVV*QV*LL-FLPR


Parental protein
SNLSLDILRGNDETIGFEDILNDPSQSELMGEPHLMVEYKLGLL
SNLSLDIL..ND.T.GFEDIL.D.SQ..LM.EP.LMV.YKLG.L
Retrocopy
SNLSLDILKSNDGTTGFEDIL-DLSQNKLMEEPYLMVKYKLGFL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide