RetrogeneDB ID:
retro_mputfur_1452
Organism:
Location:
GL897142.1:1564650-1565030 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
51.85 %
Coverage:
81.71 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1452
TCAGTGGCCAAGCTTTACCCAACCTGGGCCCCAGAACCTTTTCAAATGCCTAGTGAAGAG
AATTCCCAGGAAGACTCAGGTGCCTCTCAACCTATCTCAGAAGTATCAATAAGGAACCAT
AGTGAATTGACTCTCAGACCCTTGTATCAAACTCCCTTCCCCTCCACCAAATAGCAGGAC
AGAGAGAAGAACTCGCAGGGTTTGTTGACCGCACACTCAGCAGGAGGAGGGATGGAGTAC
GGACACTGTTAACTGCTCAGAAAGAAAGGATGGAAAGGACGGTGCCATTTACTAAATACC
AGGGCCGCCTCAACCAGCGCGCTATGCTGCCAAAAGAATGACAGCAGAAGGAAGCTGAGG
TGGAATCAAGAATGGAAAGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SPEQLYPTWAPGSSQTPNEEDSQESSGASQTISEVLTKNLGKLTLDSSIILPSPLPEYPSQQPGRERKPQGL-VERILSSSGRRTGVRTLLTARKERMAR
S...LYPTWAP...Q.P.EE.SQE.SGASQ.ISEV...N...LTL........P.P....Q...RE...QGL.V.R.LS...RR.GVRTLLTA.KERM.R
Retrocopy
SVAKLYPTWAPEPFQMPSEENSQEDSGASQPISEVSIRNHSELTLRP--LYQTPFPSTK*QD--REKNSQGL/VDRTLSR--RRDGVRTLLTAQKERMER


Parental protein
MIRMIQYQRYLNPGSQLQKDLQQKETEEGETRVER
......YQ..LN....L.K..QQKE.E..E.R.ER
Retrocopy
TVPFTKYQGRLNQRAMLPKE*QQKEAEV-ESRMER


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide