RetrogeneDB ID:
retro_mputfur_1464
Organism:
Location:
GL897147.1:1324794-1325955 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
65.63 %
Coverage:
97.97 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
NR2F2
Parental gene aliases:
No gene alias available
Parental gene description:
nuclear receptor subfamily 2, group F, member 2 [Source:HGNC Symbol;Acc:7976]

Genomic region (view in browser)





>retro_mputfur_1464
ATGGAAACGGCGGTCAACACTCAGAGCGACCCCCAGGATGAGATCCCCAGCTTGGAGGGT
AGCCCGGTCTTGCAGGTGATTCCGGAGCCAGGGCCGCCACCCAGTGCCCCATACCTGCCA
CAGACACCCAGCCAAGGTGGCCCAGTCATCAGGCCGGCGGAAACGGTGGCTGTGGAACGG
AACAGCCTTGGTGGCTTGAATGGTGACAACCGGCAGCAGCAGCAACAGCGTATCGATTGC
GTGGTATGTGGGGCCAAGTCAAGTGGCAAACACTACGGCCAGTTCACATGCGAGGGCTGC
AAGAGCTTCTTCAAGCGCAGTGTGGGGAAGAGTCAAAACTTCACATGTCAAGCCAACAAA
GACTGTCGCATTGACCAGCACCAGCGCAACCGGTGCCAGTACTGCCGCTTCAAAAAGTGC
GTCGACATGGGTATGAAAAGAGATGCAGTGCACAAGAACAGGATACCACTCGTCCAGCCA
ACCCGTGGGCAAGTAGTGCCGACCAATAGGGAATCCCTCGGCTTCCACACTAACCTGTCT
GATTATATTTCTCTGCTGATCCACGCCGAGCCCTATACCCTGTTCGGGTCAGGCAGCCAG
TGCGTGCAGCCCAACGATGTCTTGACCCTTGAGAACATTTGTGAGCAGGCTGCCCGGGTG
CTCTTCGGTGCCATTGAATGGGCCCAGAAAATACCCTTCTTCCCTGACCTGCCCATCGAC
GACCAAGTGGCCCTGCTTCGCCTCACCTGGTGTGACCTGTTCATGGTGAACTGGGCACAG
TGCTCCATGCCACTCCATGTCCTCCCATTCCTGGCTGCCACCAGCTTACAGGGCTCGCAG
GCGTCCTCCAGCCAGGTGGCCATCTTTATGGACCAGGTACAGATTTTTCAAGAGCAAATG
GAGAAGTTCAAAACTCTGCGCGTCGACCCCGTTGAGTACAGCTGCATCAAAGCCATAATC
CTGTTCACTTCAGATGCCATTGGTCTCTCTGATGTAGCCAGTGTGGAAAGCTGGCAGGAA
AAGTCCCAGTCAGCTTTGGAGAAATACGTTAGAATCCAGTACTCCAACCAACCAATGAGA
TTTGGAAAGCTTTTGCTTCGCCTTCCTTCCCTCCGCACAGTCTCCTCCTCCGTGATAGAG
CAATTATTTTTCGTTCATTTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAMVVSTWRDPQDEVPGSQGSQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAGGQGGPGGPGGD-KQQQQQHIECVVCGDKSSGKHYGQFTCEGC
M...V.T..DPQDE.P...GS...Q..P.PGPPP.AP..PQTP.QGGP...PA.T.A......GG..GD..QQQQQ.I.CVVCG.KSSGKHYGQFTCEGC
Retrocopy
METAVNTQSDPQDEIPSLEGSPVLQVIPEPGPPPSAPYLPQTPSQGGPVIRPAETVAVERNSLGGLNGDNRQQQQQRIDCVVCGAKSSGKHYGQFTCEGC


Parental protein
KSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGSQ
KSFFKRSV......TC.AN..C.IDQH.RN.CQYCR.KKC...GM.R.AV...R.P..QPT.GQ...TN...L..H..LS.YISLL..AEPY.....GSQ
Retrocopy
KSFFKRSVGKSQNFTCQANKDCRIDQHQRNRCQYCRFKKCVDMGMKRDAVHKNRIPLVQPTRGQVVPTNRESLGFHTNLSDYISLLIHAEPYTLFGSGSQ


Parental protein
CMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQV
C.QPN.....ENICE.AAR.LF.A.EWA..IPFFPDL.I.DQVALLRLTW..LF..N.AQCSMPLHV.P.LAA..L..S..S...V..FMD...IFQEQ.
Retrocopy
CVQPNDVLTLENICEQAARVLFGAIEWAQKIPFFPDLPIDDQVALLRLTWCDLFMVNWAQCSMPLHVLPFLAATSLQGSQASSSQVAIFMDQVQIFQEQM


Parental protein
EKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL
EK.K.L.VD..EYSC.KAI.LFTSDA.GLSDVA.VES.QEKSQ.ALE.YVR.QY.NQP.RFGKLLLRLPSLRTVSSSVIEQLFFV.L
Retrocopy
EKFKTLRVDPVEYSCIKAIILFTSDAIGLSDVASVESWQEKSQSALEKYVRIQYSNQPMRFGKLLLRLPSLRTVSSSVIEQLFFVHL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide