RetrogeneDB ID:
retro_mputfur_1465
Organism:
Location:
GL897147.1:1496689-1497136 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.86 %
Coverage:
84.75 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
CNBP
Parental gene aliases:
No gene alias available
Parental gene description:
CCHC-type zinc finger, nucleic acid binding protein [Source:HGNC Symbol;Acc:13164]

Genomic region (view in browser)





>retro_mputfur_1465
GGTCACGGAAGCTGTGGCAGAGGTGATTTTATCTCTGATAGAAGTTTCCAGTTTGTTTCC
TCACCCTTCCAGACATTTGTTATTGTTGTGGTGAGTCTGGTCATCTTGGCAAGGGTTTTG
ATCTTCAGGATGATGCCTGCTGTAGCTGTGGTAGAGGTGGGCACAGGGCCAAGGGCTGCT
AGGAGCCCAAGAGAGAGTAAGAGCAATGCCACAACAACTTGGCAAACCAGGCCATCTGAC
TCGTGATTGTGCCATGTGGATGAGCAGCAGTGCTCTTCTTGTGGAGAATTTGAACACATT
CAGAAAGACTGCACCAGAGCAAAGTGCTATGGGTGTGGTGAAACTGGTCACATGGCCATC
AACTGCCGCAAGACAAGTGAAGTCAACTGTTACTGCTCCGGCGAGTCAGGGTATCCTGCA
CGGGAATGCACAATTGAAGCCATAGCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GMRSRGRGGFTSDRGFQFVSS-SLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNC-GKPGHLARDCD-HADEQKCYSCGE
G..S.GRG.F.SDR.FQFVSS..LPDICY.CGESGHL.K..DLQ.DAC..CGRGGH.AK.C.EPKRE.EQC..N..GKPGHL.RDC..H.DEQ.C.SCGE
Retrocopy
GHGSCGRGDFISDRSFQFVSS/TLPDICYCCGESGHLGKGFDLQDDACCSCGRGGHRAKGC*EPKRE*EQCHNNL/GKPGHLTRDCA/HVDEQQCSSCGE


Parental protein
FGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
F.HIQKDCT..KCY.CGETGH.AINC.KTSEVNCY..GESG..ARECTIEA.A
Retrocopy
FEHIQKDCTRAKCYGCGETGHMAINCRKTSEVNCYCSGESGYPARECTIEAIA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide