RetrogeneDB ID:
retro_mputfur_147
Organism:
Location:
GL897476.1:47549-49433 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.83 %
Coverage:
71.73 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
GSPT1
Parental gene aliases:
No gene alias available
Parental gene description:
G1 to S phase transition 1 [Source:HGNC Symbol;Acc:4621]

Genomic region (view in browser)





>retro_mputfur_147
ATGGATCCGGGCAGCAGCAGCAGCGACTCAGCACCCGACTGCTGGGACCAGGTGGACATG
GAAGCCCCGGGTTCGGCCCCGAGCGGAGACCCAGCCTCCTCGGCGGTTGCCGAGGCCCAG
CAGGAGCATCTCAGCTCGGCCTTCAGCCGTCAGCTCAACGTCAATGCCAAACCCTTCGTG
CCTAACGTACACGCCGCGGAGTTCGTGCCGTCCTTTCTGCGGGGCCCGGCCCAGCTGCAG
CCCCCCCCGGCCGACATCACCAGCATCGATGAAACCTGCACCGGCGCGGGCGACCTTCAA
GGTAAAAAGCTGGGACGGGGGGCACCTGTGGAGCATTCCAAAGAGGAACAGTTAGTGTTG
CATGAAGGTTCCAATTCAGCCGTTACCATGGAACTTTCAGAACCTGTTGTAGAAAATGGA
GAGGTGGAGATGATCCTAGAAGAGTCATGGGAGCACAATAAAGAAGTAAGTGAAGCTGAG
CCAGGGGGTAGTTCCTTGGGAGATTCAGGGCCCCCAGAAGAAAGTGGCCAGGAAGTGATG
GATAAAGAGGAAATGAGAAAATCTAAATCCGTGTTCGTGCCTTCAGGTGCTCCTAAAAAA
GAACACGTAAATGTGGTGTTCATTGGGCATGTAGATGCTGGCAAGTCAACCATTGGAGGA
CAAATAATGTTTTTGACAGGAATGGTTGACAAAAGGACACTTGAGAAATATGAGAGAGAA
GCTAAAGAAAAAAACAGAGAAACTTGGTATTTGTCCTGGGCCTTAGATACAAATCAGGAA
GAACGAGACAAGGGTAAAACAGTAGAAGTGGGTCGTGCCTATTTTGAAACAGAAAAGAAA
CATTTCACCATTTTAGATGCTCCTGGCCACAAGAGTTTTGTCCCAAATATGATTGGTGGT
GCTTCTCAAGCTGATCTGGCTGTACTAGTAATCTCTGCCAGGAAAGGAGAATTTGAAACT
GGATTTGAGAAAGGTGGACAGACAAGAGAACATGCGATGTTGGCAAAAACAGCAGGGGTA
AAACATTTAGTAGTGCTTATTAATAAGATGGATGATCCCACAGTTAATTGGAGCAGCGAG
AGATATGAAGAATGTAAAGAAAAACTGGTGCCCTTTTTGAAAAAAGTTGGTTTTAGTCCC
AAAAAGGACATTCACTTTATGCCCTGCTCTGGGCTGACAGGGGCAAATATTAAAGAGCAA
TCAGATTTTTGCCCTTGGTACACTGGATTACCATTTATTCCGTATTTGGATAATATGCCA
AACTTCAACAGATCAATTGATGGACCAATTAGACTGCCAATTGTGGATAAGTACAAGGAT
ATGGGCACCGTGGTCCTGGGAAAGCTGGAATCAGGATCCATTTTTAAGGGCCAGCAGCTT
GTGATGATGCCAAACAAACACAATGTGGAAGTTCTTGGAATTCTTTCTGATGATGCTGAA
ACTGATTATGTAGCCCCAGGTGAAAACCTTAAAATCAGACTGAAGGGAATTGAAGAAGAA
GAGATTCTTCCAGGATTCATACTTTGTGACCCTAATAATCTGTGCCATTCTGGACGTACC
TTTGACGTTCAGATAGTGATTATTGAGCACAAGTCCATCATCTGTCCAGGCTATAATGCG
GTGCTGCACATTCATACTTGTATTGAGGAAGTTGAGATAACAGCCTTAATCTCCTTGGTA
GACAAAAAGTCAGGAGAGAAAAGTAAGACACGGCCCCGCTTCGTGAAACAAGATCAAGTG
TGCATTGCCCGTTTAAGGACAGCAGGGACTATCTGCCTTGAAACATTCAAAGATTTTCCT
CAGATGGGTCGTTTTACTTTAAGAGATGAGGGTAAGACCATTGCGATTGGAAAAGTTCTG
AAACTGGTCCCAGAGAAGGACTAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
YLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINK
YLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHL.VLINK
Retrocopy
YLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLVVLINK


Parental protein
MDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYTGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYKDMGTVVLGKL
MDDPTVNWS.ERYEECKEKLVPFLKKVGF.PKKDIHFMPCSGLTGAN.KEQSDFCPWYTGLPFIPYLDN.PNFNRS.DGPIRLPIVDKYKDMGTVVLGKL
Retrocopy
MDDPTVNWSSERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYTGLPFIPYLDNMPNFNRSIDGPIRLPIVDKYKDMGTVVLGKL


Parental protein
ESGSICKGQQLVMMPNKHNVEVLGILSDDVETDSVAPGENLKIRLKGIEEEEILPGFILCDLNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIE
ESGSI.KGQQLVMMPNKHNVEVLGILSDD.ETD.VAPGENLKIRLKGIEEEEILPGFILCD.NNLCHSGRTFD.QIVIIEHKSIICPGYNAVLHIHTCIE
Retrocopy
ESGSIFKGQQLVMMPNKHNVEVLGILSDDAETDYVAPGENLKIRLKGIEEEEILPGFILCDPNNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIE


Parental protein
EVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD
EVEITALI.LVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD
Retrocopy
EVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide