RetrogeneDB ID:
retro_mputfur_1470
Organism:
Location:
GL897152.1:355531-355879 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.5 %
Coverage:
90.84 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
RPS19
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S19 [Source:HGNC Symbol;Acc:10402]

Genomic region (view in browser)





>retro_mputfur_1470
ATGCCCCGAGTCACCTTAACCAGCGGAAGTTTGTCAGAGCTCTCAGCCTTCCTGGACCTG
TCTGGGAAGCTGCAGGTCCAGGGGTGGCCAGACCCCGTCAAGGTGACCAAGCATAAAGAT
CGTGCTTCCCACGATGAGAACTGGTTCTCTATGTGAGCTGCTTCCCTGGCCCAACACCTG
TACCTCCAGGACAGCACTGGGGTCGGCTCCATGACCAAGATCTATGGGGAGAATCAGAGT
AACAATGTCTTCTTGCCCAGCCACTTCAGAAGAGGCTCCAAAAGCATGGCCTGAAAGGTC
CTCCAATCCCCAGAGGGGCTCAATATGCTGGGAAAGAACCAAGATGGG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGV-MPSHFSRGSKSV
MP.VT.......E....L.AFL..SGKL.V..W.D.VK..KHK..A..DENWF...AAS.A.HLYL....GVGSMTKIYG..Q.N.V..PSHF.RGSKS.
Retrocopy
MPRVTLTSGSLSE----LSAFLDLSGKLQVQGWPDPVKVTKHKDRASHDENWFSM*AASLAQHLYLQDSTGVGSMTKIYGENQSNNVFLPSHFRRGSKSM


Parental protein
ARRVLQALEGLKMVEKDQDG
A..VLQ..EGL.M..K.QDG
Retrocopy
A*KVLQSPEGLNMLGKNQDG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide