RetrogeneDB ID:
retro_mputfur_1472
Organism:
Location:
GL897152.1:2120541-2120912 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
76.19 %
Coverage:
60.68 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
BTF3
Parental gene aliases:
No gene alias available
Parental gene description:
basic transcription factor 3 [Source:HGNC Symbol;Acc:1125]

Genomic region (view in browser)





>retro_mputfur_1472
ATGAAAGAAACTATCACCCACCAGGAGAAACTCACCTAACTGCAAGCACAAGTGCACATT
GGTGGGAAAGGAACTGCTCACCAAAAGAAGGTGGTTCACAGAAGAGCTATAGCCAATGAT
AAAAACCTGCAGTTCTCCTTAAAGAAGTTAGGGGTACACAATACCTCTGGTATTGAAGAA
GTGAATAGTTCACAAACCAAGGAACAGTGATGTACTTTAACAACCCCAAAGTTCAGGCAT
TGCTGGTAGCAAACACTTTCACCATTACAGGCCATGCTGACACAAAGCAGCTGATGGAAA
AGCTAGCCGGTATCTTAAGCCCACTTGGTGCCTACAGTCTGACCAGTTGAAGAACACTGG
CTGAAGCTCTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNM-FTNQGTVIHFNNPKVQASLAANTFTITGHAETKQL
MKETI..QEKL..LQAQV.IGGKGTA..KK.VVHR.A.A.DK.LQFSLKKLGV.N.SGIEEVN..FTNQGTV..FNNPKVQA.L.ANTFTITGHA.TKQL
Retrocopy
MKETITHQEKLT*LQAQVHIGGKGTAHQKK-VVHRRAIANDKNLQFSLKKLGVHNTSGIEEVNS/FTNQGTVMYFNNPKVQALLVANTFTITGHADTKQL


Parental protein
TEMLPSILNQLGADSLTSLRRLAEAL
.E.L..IL..LGA.SLTS.R.LAEAL
Retrocopy
MEKLAGILSPLGAYSLTS*RTLAEAL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide