RetrogeneDB ID:
retro_mputfur_1473
Organism:
Location:
GL897154.1:861636-862018 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.28 %
Coverage:
60.56 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
FBXO27
Parental gene aliases:
No gene alias available
Parental gene description:
F-box protein 27 [Source:HGNC Symbol;Acc:18753]

Genomic region (view in browser)





>retro_mputfur_1473
ATGTCTTCCTTAGGGTTGTGTCGCTAAAAACAGGTGTTGGACCTGGAGGAAGAGGGTTTG
TGGCCAGAGCTGCTGGATAATGACAAGACTGAGATTTGTGTCCCTGGTGGGGAGACTGAC
ACAACAATGACTGCATGTATCGACTCCTTGTCCAACTTCTAGATGGTAACCAGACTGTGC
TGGATAAATTCTCTGCTGTGCCCATTCCCATCCAACAGTGGAACAACAATGTCTTCTTTC
AGGTCACCCATGTGTTCTCCAACGTCAAGATGGGTGTCTGCTTTATGTCTTTCCAACACT
GGGACCAGGACAGGCAGTTTTGGGTTAGTCAGTATGAAGCCCATGTGACCATTCCAGTGT
GGTTGTGCAGGCCCAGCTGTCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VSSFSWCRKKQVLDLEEEGLWPELLDSGKIEICVSD-WWGARHDSGCMYRLLVQLLDANQTVLDKFSAMPVPIQQWNNNVCFQVTHVFSNIKMGVRFVSF
.SS...CR.KQVLDLEEEGLWPELLD..K.EICV...W.G..H...CMYRLLVQLLD.NQTVLDKFSA.P.PIQQWNNNV.FQVTHVFSN.KMGV.F.SF
Retrocopy
MSSLGLCR*KQVLDLEEEGLWPELLDNDKTEICVPG/W-GD*HNNDCMYRLLVQLLDGNQTVLDKFSAVPIPIQQWNNNVFFQVTHVFSNVKMGVCFMSF


Parental protein
EHWGQDTQFWAGHYGARVT-NSSVVVRAQLS
.HW.QD.QFW...Y.A.VT..SSVVV.AQLS
Retrocopy
QHWDQDRQFWVSQYEAHVT/HSSVVVQAQLS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide