RetrogeneDB ID:
retro_mputfur_1476
Organism:
Location:
GL897155.1:1556975-1557982 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.94 %
Coverage:
87.01 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
LDHA
Parental gene aliases:
No gene alias available
Parental gene description:
L-lactate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:C6L2F2]

Genomic region (view in browser)





>retro_mputfur_1476
TCTAAGTCCAAAATGGCAACTCTCAAAGATCAGCTGATTCAGAATCTTCTTAAGGAAGAA
CATGTCCCCCAAAATAAGATTATAGGGGTTGGGTTGGGGTTGGTGCTATTGGCATGACTT
GTGCCATCAGTATCTTAATGACTTGGCAGATGAATTTGCTCTTGTTGATGTCACAGAAGA
CAAACTGAAGGGAGAGATGATGGATCTCCAGCACAGAAGCCTTTTCCTTAGAACACCAAA
AATTGTCTCTGGCAAAGACTATAATGTGACTGCAAACTCCAAGCTGGTTATTATCACAGC
TGGGGCACATCAGCAAGAGGGAGAAAGCTGTCTTAATTTGGTCCAGCATAACAGGAACAT
CTTTAAGTTCATCATTCTTAATGTCATCAAATACAGTCCAAATTGCAAGTTGCTTGTTGT
TTCCAATCAAGTGGATATCTTGACCTATGTGGCTTGGAAGATAAGTGGCTTTCCCAAAAA
CCTTGTTAATTGGAAGTCGTTGCAATCTGCATTCAGCCCGGTTCCGTTACCTAATGGGGG
AAAGGCTGGGCGTTCACCCGTTAAGCTGTCATGGGTGGCTCCTCGGGGAGCATGGAGACT
CCAGTGTGCCTATATGGAGTGGAGTAAACATTGCTGGTGTCTCTCTGAAGAATCTGCACC
TGGACTTAGGCACTGATGCAGATAAGGAACAGTGGAAAGAGGTTCATAAACAGGTGGTTG
AGAGTGCCTATGAGGTGATCAAACTGAAAGGCTACACTTCCTGGGCCATTGGACTGTCTG
TGGCAGATTTGGCAGAAAGTATAATGAAGAATCTTAGACGGGTGCATCCAATTTCCACCA
TGATTAATGGTCTGTATGGAATAAAAGATGATGTCTTCCCTAATGTTCCTTGCATCTTGG
GACAGAATGAAATTTCAGATGTTGTGAAGGTGACTATAACTCCTGAGGAAGGAGTCCATT
TGAAGAAGAGCGCAGATACACTCTGGGGGATCCCAAAGGACCTGCAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SKSKMATLKDQLIQNLLKEEHVPQNKITVVGVGAVGMACAISIL-MKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIIT
SKSKMATLKDQLIQNLLKEEHVPQNKI..VG.G.V..A.........DLADE.ALVDV.EDKLKGEMMDLQH.SLFLRTPKIVSGKDYNVTANSKLVIIT
Retrocopy
SKSKMATLKDQLIQNLLKEEHVPQNKIIGVGLGLVLLA*LVPSV\LNDLADEFALVDVTEDKLKGEMMDLQHRSLFLRTPKIVSGKDYNVTANSKLVIIT


Parental protein
AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRV-IGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHG
AGA.QQEGES.LNLVQ.N.NIFKFII.NV.KYSPNCKLLVVSN.VDILTYVAWKISGFPKN.V.IGS.CNL.SARFRYLMGERLGVHPLSCHGW.LGEHG
Retrocopy
AGAHQQEGESCLNLVQHNRNIFKFIILNVIKYSPNCKLLVVSNQVDILTYVAWKISGFPKNLV\IGSRCNLHSARFRYLMGERLGVHPLSCHGWLLGEHG


Parental protein
DSSVPVWSGVNIAGVSLKNLHPDLGTDADKEQWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKDDVFLSVPCI
DSSVP.WSGVNIAGVSLKNLH.DLGTDADKEQWKEVHKQVV.SAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMI.GLYGIKDDVF..VPCI
Retrocopy
DSSVPIWSGVNIAGVSLKNLHLDLGTDADKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMINGLYGIKDDVFPNVPCI


Parental protein
LGQNGISDVVKVTLTTEEEARLKKSADTLWGIQKELQ
LGQN.ISDVVKVT.T.EE...LKKSADTLWGI.K.LQ
Retrocopy
LGQNEISDVVKVTITPEEGVHLKKSADTLWGIPKDLQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide