RetrogeneDB ID:
retro_mputfur_1481
Organism:
Location:
GL897157.1:1931113-1931628 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
76.3 %
Coverage:
82.69 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
RPL7
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L7 [Source:HGNC Symbol;Acc:10363]

Genomic region (view in browser)





>retro_mputfur_1481
ATGCTTTGAAAGGCAAAGAGGAAGCTTATCTATGAAAAAGCTAAGCATTATCACAAGGGA
TATAGGCATATGTACAGAACTGAGATTTGGATGGCTAGGATGTCAAGAAAAGTTGACAAC
TTCTAGGTACCTGCAGAACCCAAACTGGCACATATCACTGGGATCAGAGGTTTCAGTGGT
GTGAACCCAGAGGTTCAAAAGGTGTTGCAATTTCTTCGTGTTCACCAAATCTTCAATGGC
ATCTTTTTAAGCTCAACAAAGCTTCAGTTAACATGCTAAGGACTGTGGAACCATATATAG
CATACATATATCCAAACCTGATGCTGGTGAATCAATTGATCTACAAGCACAGTTACTACA
AAATCAATAAGAAGCAGATTGCCCTGACACAGAACACACTGATTTCTCAATCTCTTGGTA
AATATGGCATAATCTGCATGGAGCATCTGATTCACGAGGCCTGTACTGTTGGAAAATGTT
TCAAGGAAGCAAACAACTTTTTATGGCCCTTCAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFV-KLNKASVNMLRIVEPY
ML.KA.RKLIYEKAKHYHK.YR.MYRTEI.MARM.RK..NF.VPAEPKLA....IRG..GV.P.V.KVLQ.LR..QIFNG.F..KLNKASVNMLR.VEPY
Retrocopy
ML*KAKRKLIYEKAKHYHKGYRHMYRTEIWMARMSRKVDNF*VPAEPKLAHITGIRGFSGVNPEVQKVLQFLRVHQIFNGIFL/KLNKASVNMLRTVEPY


Parental protein
IAWGYPNLKSVNELIYKRGYGKINKKRIALTDNTLIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFK
IA..YPNL..VN.LIYK..Y.KINKK.IALT.NTLI..SLGKYGIICME.LIHE..TVGK.FKEANNFLWPFK
Retrocopy
IAYIYPNLMLVNQLIYKHSYYKINKKQIALTQNTLISQSLGKYGIICMEHLIHEACTVGKCFKEANNFLWPFK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide