RetrogeneDB ID:
retro_mputfur_1488
Organism:
Location:
GL897165.1:1125990-1126220 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
71.25 %
Coverage:
52.03 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
SSBP1
Parental gene aliases:
No gene alias available
Parental gene description:
single-stranded DNA binding protein 1, mitochondrial [Source:HGNC Symbol;Acc:11317]

Genomic region (view in browser)





>retro_mputfur_1488
AAAACGTACCAAATGGGTGATGTCAGTCGAAAAACAACATAGCACAGAATATCAGTATTC
TGACCAGGCCTCAGAGATGTGGCACATCAGTAAGTGAAAAAGGGGTCCTGGATTTATGTG
AAGGGAAAGCAGACTGTGGTGAATACACAAGCAAAAAATAATGTGAGGCGAAAAGAAAAA
AGAATCATAGCTGATAACATTGTATTTCTGGTGACCACACCAAAGACCAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EAYQMGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYV-EGKVDYGEYTD-KNNVRRQATTIIADNIIFL-SDQTKEK
..YQMGDVS.KTT.HRISVF.PGLRDVA.Q.VKKGS.IYV.EGK.D.GEYT..KNNVRR....IIADNI.FL..D.TK..
Retrocopy
KTYQMGDVSRKTT*HRISVF*PGLRDVAHQ*VKKGSWIYV/EGKADCGEYTS\KNNVRRKEKRIIADNIVFL/GDHTKDQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide