RetrogeneDB ID:
retro_mputfur_1492
Organism:
Location:
GL897169.1:1689655-1690039 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
67.67 %
Coverage:
73.99 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
GCSH
Parental gene aliases:
No gene alias available
Parental gene description:
glycine cleavage system protein H (aminomethyl carrier) [Source:HGNC Symbol;Acc:4208]

Genomic region (view in browser)





>retro_mputfur_1492
TCTCTGCTCCACGTGCATAAATTCATACACAGACGTGAATGGATAACAAGAGAAAATGGT
TTTGGAACTATGGACATCAGAAATTTTACACAGGAACCTTTGGGAGATGTGATGTAGTTT
ACTGTAGTCTGTCTAAAGTTGGGACAGAATTGAGCAAATAATGTGAGTTTGGTGCTTTGA
AAAGTATGAAAGCTGCTAGTGAGCTCTGTTCTTTATCAGGAGAAATAACTGAAATTGATA
AAGCCTTCCAGAAAATCCAGGACTTGCCAACAAATCATGTTATGAACATGGTTGGCTGAT
CAAGATAAACTTAGTAATCCTTCAGAACTGGATGAATTAATGAGTGAAGAAGCATCTGAA
AAATTCATAAAATCTACTGAGGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ALLSVRKFTDKHEWITTENGIGTV-GISNFAQEALG--DVVYCSLPEVGTKLNKQDEFGALESVKAASELYSPLSGEVTEINEA-LAENPGLVNKSCYED
.LL.V.KF....EWIT.ENG.GT..G...F.....G..DVVYCSL..VGT.L.K..EFGAL.S.KAASEL.S.LSGE.TEI..A.L.ENPGL.NKSCYE.
Retrocopy
SLLHVHKFIHRREWITRENGFGTM/GHQKFYTGTFGRCDVVYCSLSKVGTELSK*CEFGALKSMKAASELCS-LSGEITEIDKA/LPENPGLANKSCYEH


Parental protein
GWLIKI-ALSNPSELDELMSEEAYEKYIKSIEE
GWLIKI..LSNPSELDELMSEEA.EK.IKS.EE
Retrocopy
GWLIKI/KLSNPSELDELMSEEASEKFIKSTEE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide