RetrogeneDB ID:
retro_mputfur_1496
Organism:
Location:
GL897171.1:1313523-1313937 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
85.51 %
Coverage:
65.09 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CCDC152
Parental gene aliases:
No gene alias available
Parental gene description:
coiled-coil domain containing 152 [Source:HGNC Symbol;Acc:34438]

Genomic region (view in browser)





>retro_mputfur_1496
AACTATTCATTAAAAGTAATGCAAACAAAGGAGATCTCAATTAAAGAAGAATGTGCTGCT
CTTCGTAATATGATAAAAGGGCTACAACAGACCATTAAATCTCAACATGATTTGAAAAGT
GAAAATGAACAACTAAAAAGAAATGTTGATCTTATGAAAGAAAATTTAAAATCTCATGAA
CAGGCATATAAGAATACTATTGCCAAACTTATGAGTGAAATGAAAATCAAAGAGGAGGGA
CATAAGATAGAAATAAGGAAACTTCGTCAGGATATGCGGGACAAAATTGAGTCAAAAGAA
GAAAAGCATAAAGACCTGATAGAGAAAAAGGAGGTAGAAATTTCAGAGTTAAATGCAAAG
TTAAGAACTCAAGAGAAGGAGAAACAAAGTGAAATTATCAAATTACAGTTAGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NYLLKVMQTKEVSIKEECATLHNMIKGLQQTIKSQHDLRGENEQLKRSADFMKENFKSHEQEYKNNIAKLMSEMKIKEEGYKIEIRKLHQDMQEKIESNE
NY.LKVMQTKE.SIKEECA.L.NMIKGLQQTIKSQHDL..ENEQLKR..D.MKEN.KSHEQ.YKN.IAKLMSEMKIKEEG.KIEIRKL.QDM..KIES.E
Retrocopy
NYSLKVMQTKEISIKEECAALRNMIKGLQQTIKSQHDLKSENEQLKRNVDLMKENLKSHEQAYKNTIAKLMSEMKIKEEGHKIEIRKLRQDMRDKIESKE


Parental protein
KKHKELIEKKEVEISELNAKLRTQETEKQSEIIKLQLE
.KHK.LIEKKEVEISELNAKLRTQE.EKQSEIIKLQLE
Retrocopy
EKHKDLIEKKEVEISELNAKLRTQEKEKQSEIIKLQLE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide