RetrogeneDB ID:
retro_mputfur_1497
Organism:
Location:
GL897176.1:676623-677212 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.91 %
Coverage:
73.61 %
Frameshifts:
5
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1497
GGTCACCTGGTCAAGGACATGAAGAACAAGTCCTGGAGGAGATATATTTTATCTCCCTGC
CCATCAAGGAATCTGAGATCATTGACTTCTCTCTGGGAGCATCCCTCAAGGATGAGGTTT
TGAAGATTCTGCTGGTGCAAAAGCAGACCCATGGTGGCCAGTGGACCAGGTTCAAGGCAT
TTGTTGCCATCAAAGATGACAATGGACACATCAGTCTGGGTGTCAAGTCTCCAAGGAGTT
AGCCACTGCCATCCGTGGGGCCATCTCCTGGCCAAGGTTTCCATTGTCCTGTGTGGCTGA
GCTACTGGGGGAACAAGATCTGCAAGCCCCACAGTGTTGTGTACAAGGTAACTGGCTGTT
GTGGGTCTGTGTTACTGTATCTCATCCCTGCTCCCAGAGGCACTGGCATTGTCTCAGCCC
CTATGCCCAAGAAGCTAATGATGATGGCTGAAATTTATGACTGCTACACCTGGCCAGAGG
CTGAACTGGCACTCTGGGCAACTTTGCCAATTCTACTTTGGATACGATCTTCAAGACCTG
CAGTTATCCCACTCTTGACTTCTGCAAGGATAGTGTTTACCAAGTATCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GRLVKDMKIKS-LEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVK-CSKEVATAIRGAI-ILAKLSIV
G.LVKDMK.KS.LEEIY..SLPIKESEIIDF.LGASLKDEVLKI..VQKQT..GQ.TRFKAFVAI.D.NGH..LGVK..SKE.ATAIRGAI..LAK.SIV
Retrocopy
GHLVKDMKNKS/LEEIYFISLPIKESEIIDFSLGASLKDEVLKILLVQKQTHGGQWTRFKAFVAIKDDNGHISLGVK/VSKELATAIRGAI/LLAKVSIV


Parental protein
-PVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYT-SARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVF
.PV...YWGNKI.KPH.V..KVTG.CGSVL..LIPAPRGTGIVSAP.PKKL.MMA.I.DCYT..ARG.T.TLGNFA..T.D.I.KT.SY.T.D..K..V.
Retrocopy
/PVWLSYWGNKICKPHSVVYKVTGCCGSVLLYLIPAPRGTGIVSAPMPKKLMMMAEIYDCYT/LARG*TGTLGNFANSTLDTIFKTCSYPTLDFCKDSVY


Parental protein
TKS
..S
Retrocopy
QVS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide