RetrogeneDB ID:
retro_mputfur_15
Organism:
Location:
GL896917.1:17211251-17212538 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
90.46 %
Coverage:
80.84 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
KRT13
Parental gene aliases:
No gene alias available
Parental gene description:
keratin 13 [Source:HGNC Symbol;Acc:6415]

Genomic region (view in browser)





>retro_mputfur_15
ATGAGCACCACATTTCTGCAGACCTCTTCTTCCACCTTTGGGGGTGGCTCTACCAGGGGG
GGCACCCTCCGGGTTGGGGGAGGCGGCTTTGGTGGGGGGAGTCTCTGTGGGGGCGGTGGA
AGCCGCACTATTTCGGCTTCTTCTGCTAGGTTCGTCTCCTCGGGGTCAGGAGGGGGCTAT
GGGGGCGGCATGAGCTGCGGCTTCGGTGGAGGGGCTTGTAGTGGTTTTGGGGGTGGCCTT
GGAGGTGGCTTTGGTGGGAGTTTTGGCGGTGGCTTCGGTGACTACGGTGGTGGTGATGGA
GGCCTCCTTTCTGGCAATGAGAAGATCACTATGCAGAACCTCAACGACCGCCTGGCCTCC
TACCTGGAGAAGGTGCGGGCCCTGGAGGAGGCCAACACAGAGCTGGAGGTCAAGATCCGG
GACTGGTACCAGAAGCAGAGCCCCAGCAGCCCGGAGCGGGACTACAGCCCCTACTTCAAG
ACCATTGAGGAGCTCCGTGACAAGATCCTGGCGGCCACCATTGACAACAACCGGGTCATC
CTGGAGATCGACAACGCCCGGCTGGCGGCGGATGACTTTAGGCTCAAGTACGAGAACGAG
CTGGCCCTGCGCCAGAGCGTGGAGGCCGACATCAACGGTCTGCGCCGGGTGCTGGACGAG
CTGACCTTGGCCAAGGCCGACCTGGAGATGCAGATTGAGGGTCTGAACGAGGAGCTGGCC
TACCTGAAGAAGAACCACGAGGAGGAAATGAAGGAGTACGGCAGCCAGCTGGCCGGCCAG
GTCAACGTGGAGATGGACGCGGCACCAGGCGTGGACTTGACCCGCGTGCTGGCCGAGATG
AGGGAGCAGTATGAGGCCATGGCAGAGAAGAACCGACGGGACGCCGAGGCCTGGTTCTTC
AGCAAGACAGAGGAGCTGAACAAGGAGGTGGCCTCCAACACAGAGATGATCCAGACCAGC
AAGACGGAGATCACAGACCTGAGGCGCACGATGCAGGGGCTGGAGATCGAGCTGCAGTCC
CAGCTCAGCATGAAAACCGGGCTGGAGGGCTCACTGGCTGAGACGGAGTGCCGCTACGCC
ACACAACTGCAGCAGATCCAGGGGCTCATCAGCAGCCTGGAGGCCCAGCTGAGCGAGCTC
CGCAATGAGATGGAGTGCCAGAACCAGGAGTACAAGACGCTGCTGGACATCAAGTCGCGG
CTGGAGCAGGAGATCGCCACCTACCGCAGCCTGCTGGAGGGCCAGGACGCCAGGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNN


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSCGFGGGAGSGFGGGFGGGLGGGFGGGLGGGFGGGFGGGFGDYGGGDGGLLSGNEKITMQNLNDRLASYLEKVRALEEANTELEVKIRDWYQKQSPSSP
.S.G.GGG.G.G...GFGGG...GFGGGLGGGFGG.FGGGFGDYGGGDGGLLSGNEKITMQNLNDRLASYLEKVRALEEANTELEVKIRDWYQKQSPSSP
Retrocopy
VSSGSGGGYGGGMSCGFGGGACSGFGGGLGGGFGGSFGGGFGDYGGGDGGLLSGNEKITMQNLNDRLASYLEKVRALEEANTELEVKIRDWYQKQSPSSP


Parental protein
ERDYSPYFKTIEELRDKILAATIDNNRVILEIDNARLAADDFRLKYENELALRQSVEADINGLRRVLDELTLAKTDLEMQIEGLNEELAYLKKNHEEEMK
ERDYSPYFKTIEELRDKILAATIDNNRVILEIDNARLAADDFRLKYENELALRQSVEADINGLRRVLDELTLAK.DLEMQIEGLNEELAYLKKNHEEEMK
Retrocopy
ERDYSPYFKTIEELRDKILAATIDNNRVILEIDNARLAADDFRLKYENELALRQSVEADINGLRRVLDELTLAKADLEMQIEGLNEELAYLKKNHEEEMK


Parental protein
EFSSQVVGQVNVEMDATPGIDLTRVLAEMREQYEAMAEKNRRDAEEWFHSKSAELTKEVTSSTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAGLEGT
E..SQ..GQVNVEMDA.PG.DLTRVLAEMREQYEAMAEKNRRDAE.WF.SK..EL.KEV.S.T.MIQTSKTEIT.LRRT.QGLEIELQSQLSMK.GLEG.
Retrocopy
EYGSQLAGQVNVEMDAAPGVDLTRVLAEMREQYEAMAEKNRRDAEAWFFSKTEELNKEVASNTEMIQTSKTEITDLRRTMQGLEIELQSQLSMKTGLEGS


Parental protein
VADTECRYATQLQQIQGLIGSLEAQLSELRSEMECQNQEYKTLLDIKSRLEQEIATYRSLLEGQDAR
.A.TECRYATQLQQIQGLI.SLEAQLSELR.EMECQNQEYKTLLDIKSRLEQEIATYRSLLEGQDAR
Retrocopy
LAETECRYATQLQQIQGLISSLEAQLSELRNEMECQNQEYKTLLDIKSRLEQEIATYRSLLEGQDAR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide