RetrogeneDB ID:
retro_mputfur_1503
Organism:
Location:
GL897182.1:1623665-1624022 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
97.48 %
Coverage:
90.84 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS19
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S19 [Source:HGNC Symbol;Acc:10402]

Genomic region (view in browser)





>retro_mputfur_1503
ATGCCTGGAGTTACTGTAAAAGACGTGAACTAGCAGGAGTTCGTCAGAGCTCTGGCAGCT
TTCCTCAAAAAGTCTGGGAAGCTGAAAGTCCCTGAATGGGTGGACACTGTCAAGCTGGCC
AAGCATAAAGAGCTTGCTCCCTACGATGAGAACTGGTTCTACACAGGAGCTGCTTCCACA
GCACGGCACCTGTACCTCCGGGGCGGTGCTGGGGTCGGCTCCATGACCAAGATCTACGGG
GGATGCCAGAGAAACGGGGTCATGCCTAGCCACTTCAGTAGAGGCTCCAAGAGCGTAGCC
CGCAGGGTCCTGCAAGCCCTAGAGGGGCTGAAAATGGTGGAAAAGGACCAAGATGGG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVA
MPGVTVKDVN.QEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYT.AASTARHLYLRGGAGVGSMTKIYGG.QRNGVMPSHFSRGSKSVA
Retrocopy
MPGVTVKDVN*QEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTGAASTARHLYLRGGAGVGSMTKIYGGCQRNGVMPSHFSRGSKSVA


Parental protein
RRVLQALEGLKMVEKDQDG
RRVLQALEGLKMVEKDQDG
Retrocopy
RRVLQALEGLKMVEKDQDG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide