RetrogeneDB ID:
retro_mputfur_1507
Organism:
Location:
GL897184.1:1075257-1075707 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.64 %
Coverage:
96.2 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
RPS11
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S11 [Source:HGNC Symbol;Acc:10384]

Genomic region (view in browser)





>retro_mputfur_1507
GACATTCAGAGTGAGCATGCCTACTCACAACAGCTAAAAATCTTTCAAACTAAGAAGGTC
CTTCTTGGAGAAACTGGCAAGGAGAAGCTCCCATGATACTATAAGAACATCGGTCTGGGT
TTCAAGGTGCCTAAGGAGGCCACTGAGGCTGCCTACATTGACAAGAAATGCCCCTTTACC
AGCAATGTCGCCATCTGAGGGTGGATTGTGTTTGGCATGGTGACCAAGATGAAGATGGAG
AGGACCATTAGTTATCCAGCAAGACTGCTGCCACCACGTCTGAAAGCATAGCTACTCAGA
GAAACACCATAAGATGTCCTATACCTGCCCTCCTGCTTTACAGATGCCCAGATCAGGAAC
ATCATCACAGTGGACAAGTGCCAGTCCCTGAGTCAGACCACATACTTCACCATTCTCAAG
GTCACCAAGCACACTGGCACCAAGAAACAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTI-VIRRDYLHYIRKYNR
DIQ.E.AY..Q..IFQ.KK.VLLGETGKEKLP.YYKNIGLGFK.PKEA.E..YIDKKCPFT.NV.I.G.I..G.VTKMKM.RTI.VI..D..H...K...
Retrocopy
DIQSEHAYSQQLKIFQTKK-VLLGETGKEKLP*YYKNIGLGFKVPKEATEAAYIDKKCPFTSNVAI*GWIVFGMVTKMKMERTI\VIQQDCCHHV*KHSY


Parental protein
FEKRHKNMS-VHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQ
.EK.HK.MS...L..CF.D.QI..I.TV..C..LS.T..F..LKVTK..GTKKQ
Retrocopy
SEKHHK-MS/LYLPSCFTDAQIRNIITVDKCQSLSQTTYFTILKVTKHTGTKKQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide