RetrogeneDB ID:
retro_mputfur_1512
Organism:
Location:
GL897193.1:1491931-1492257 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
71.17 %
Coverage:
68.59 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS27A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S27a [Source:HGNC Symbol;Acc:10417]

Genomic region (view in browser)





>retro_mputfur_1512
AAGATTTTCATAAAAACCTTATGGGGAAAGACCACTTTCCAGGATGAACCCTCAGATACA
ATAGAAACTGTAAAGGCCAAGATTCGGGATAAAGAAGGAATTCCTCCTGACCAGCAGAGA
CTGATCTCTGCTGGCAAGCACCTGGAAGATGGACGTATTCTGTCTGGCACAACATTTAAA
AGGAGTCCACTCTTCATCTTTGGCTGAGACTTCACCGTGGTTCTAAGAAAAGGAAGAAGT
CTTACACCACTCCCAAGAAATTCTTCTTCAGAATTCCTCATGAGAGAAAGAAGGTTAAGT
TAGCTGTTCTGAAATACTATAAAGTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD-YNIQKESTLHLVLRLRGGAKKRKKKSYTTPK---KNKHKRKK
.IF.KTL.GKT.T...EPSDTIE.VKAKI.DKEGIPPDQQRLI.AGK.LEDGR.LS...NI.KESTLHL.LRL..G.KKRKK...T..K......H.RKK
Retrocopy
KIFIKTLWGKT-TFQDEPSDTIETVKAKIRDKEGIPPDQQRLISAGKHLEDGRILSG/HNI*KESTLHLWLRLHRGSKKRKKSYTTPKKFFFRIPHERKK


Parental protein
VKLAVLKYYKV
VKLAVLKYYKV
Retrocopy
VKLAVLKYYKV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide