RetrogeneDB ID:
retro_mputfur_1516
Organism:
Location:
GL897202.1:1094272-1094962 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
93.1 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
VTI1B
Parental gene aliases:
No gene alias available
Parental gene description:
vesicle transport through interaction with t-SNAREs 1B [Source:HGNC Symbol;Acc:17793]

Genomic region (view in browser)





>retro_mputfur_1516
ATGGCCACCTCCACCGCCTCCTCAGAGCATTTCGAGAAACTTCACGAGATCTTCCGCGGT
CTCCAAGAAGACCTGTGAGGGGTGCTGGAGTGGCTCCTGGGGATGGCCAGGACAGAAAAG
AAGCTGATCAGAGATTTTGATGAAAAGCAACAAGAAGCAAATGAAACGCTGGCAGAGATG
GAAGAGGAACTACATTATGCACCCCTCTCTTTCCGTAACCCTATGATGTCTAAACTCCGA
ACCTACTGGAAGGACCTTGCCAAACTCCATCGGGAAGTGAGAAGCACCCCTTTGACAGCC
ACACCTGGGGGCCGAGGAGACATGAAATATGGCTCATATGCTGTAGAGAATGAGCACATG
AACCGGTTACAGTCTCAAAGGGCATTGCTTCTACAAGGCATAGACAGCCTGAACCGGGCC
ACACAGAGCGTTGAGTGTTCTCATCGGATTGCCACAGAGACTGACCAGATTGGCTCAGAA
ATCATAGAAGAGCTGGGGGAACAACGTGAACAGTTGGAACGTACTAAGAATAGGCTGGTA
AACACAAGTGAAAACTTGAGCAAAAGTCGAAAGATTCTCTGTTCAATGTCCAGAAAAGTG
ACAACCAACAAGCTGCTACTTTCCATCGTCATCATACTGGAGCTGGCCATCCTAGAGGGC
CTGGTGTACTACAAATTCTTTCACAAGCAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MATSAASSEHFEKLHEIFRGLHEDLRGVPERLLGMAGTEEKKKLIRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRTYRKDLAKLHREVRSTPL
MATS.ASSEHFEKLHEIFRGL.EDL.GV.E.LLGMA.TE..KKLIRDFDEKQQEANETLAEMEEEL.YAPLSFRNPMMSKLRTY.KDLAKLHREVRSTPL
Retrocopy
MATSTASSEHFEKLHEIFRGLQEDL*GVLEWLLGMARTE--KKLIRDFDEKQQEANETLAEMEEELHYAPLSFRNPMMSKLRTYWKDLAKLHREVRSTPL


Parental protein
TATPGGRGDMKYGSYAVENEHLNRLQSQRALLLQGTDSLNRATQSIERSHRIATETDQIGSEIIEELGEQREQLERTKNRLVNTSENLSKSRKILRSMSR
TATPGGRGDMKYGSYAVENEH.NRLQSQRALLLQG.DSLNRATQS.E.SHRIATETDQIGSEIIEELGEQREQLERTKNRLVNTSENLSKSRKIL.SMSR
Retrocopy
TATPGGRGDMKYGSYAVENEHMNRLQSQRALLLQGIDSLNRATQSVECSHRIATETDQIGSEIIEELGEQREQLERTKNRLVNTSENLSKSRKILCSMSR


Parental protein
KVTTNKLLLSIVIILELAILGGLVYYKFFHKH
KVTTNKLLLSIVIILELAIL.GLVYYKFFHKH
Retrocopy
KVTTNKLLLSIVIILELAILEGLVYYKFFHKH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide