RetrogeneDB ID:
retro_mputfur_1523
Organism:
Location:
GL897205.1:1143428-1143917 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.59 %
Coverage:
76.64 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RAN
Parental gene aliases:
No gene alias available
Parental gene description:
RAN, member RAS oncogene family [Source:HGNC Symbol;Acc:9846]

Genomic region (view in browser)





>retro_mputfur_1523
ACACCAACAGGGGACCCACCCATCAACGTGTGGGATACCGCCGGCCAGAAGAAGTTCAGC
GGACTGCGGGAAGGCTACTACATCCAAGCCCAGTGTGCCACTATAGCGTTCGATGTCACG
TCAAGGGTTATTTACAAGAATGTGCCTAACTGGCATAGAGATCTGGTACGAGTGTGTGAG
AATATCCCCATTGTGCTGTGTGGCAACAAAGTAGACCTTAAGGACAGGAAAGTTAAGGCA
AAATCTATGGTCTTCCACCGAAAGAAGAATCTTCAGTACTATGACATTTCTGCCAAAAGT
AACTACAACTTTGAAAAGCCCTACCTGTGGCTTGCTAGAAAACTAATTGGAGACCCTAAC
TTGGAGTTTGTTGCCATGTCTGCTCTCACCCCGCCAGAGGGTGTCATGGACCCAGCTTTG
GCAGCACATTATGAGCACGATCTAGAGGTTGCTCAGACAACTGCTCTCCCGGATGAGCAT
GATGACGTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQQYYDISAK
T..G....NVWDTAGQ.KF.GLR.GYYIQAQCA.I.FDVTSRV.YKNVPNWHRDLVRVCENIPIVLCGNKVD.KDRKVKAKS.VFHRKKNL.QYYDISAK
Retrocopy
TPTGDPPINVWDTAGQKKFSGLREGYYIQAQCATIAFDVTSRVIYKNVPNWHRDLVRVCENIPIVLCGNKVDLKDRKVKAKSMVFHRKKNL-QYYDISAK


Parental protein
SNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDDL
SNYNFEKP.LWLARKLIGDPNLEFVAM.AL.PPE.VMDPALAA.YEHDLEVAQTTALPDE.DD.
Retrocopy
SNYNFEKPYLWLARKLIGDPNLEFVAMSALTPPEGVMDPALAAHYEHDLEVAQTTALPDEHDDV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide