RetrogeneDB ID:
retro_mputfur_1524
Organism:
Location:
GL897207.1:1180230-1180758 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
88.07 %
Coverage:
83.81 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
POLR2E
Parental gene aliases:
No gene alias available
Parental gene description:
polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Source:HGNC Symbol;Acc:9192]

Genomic region (view in browser)





>retro_mputfur_1524
CAGACCCTGGAAGAGTTCAAGGTCCAGTTTGGGGACAAGTCGAGTGAGGGGCGGCCACAG
CACACAGACCTCATGGAGCTGGTGGCCCACAAAGATGACCCCACTGACCAGATGTTTGTG
TTCTTCCCAGAGGAGCCTAAGGTGGGAATCAAGACCATCAAGGTGTACTGCCAGTGGATG
CAGGAGGAGAACATCAAGCGGACCCTCATCGTGGTACAGCAAGGCATGACCACATCTGCT
AAGCAGTCTCTGGTGGACATGGTCCCCAAGAACGTCCTGGAGCAATTTCTGCAGCAGGAG
CTGCTCATCAACTTCACGGAGCAGGAGCTGGTCCCAGAGTATGTCATCATGACCAAGGAG
GAGGTGACAGAGCTCCTGGCCAGGTATAAACTCCAGGAGAACCAGCTGCCCAGGATCCAG
ACCGGAGACCCGGTGGCCCGCTATTTCGAGATAAAGCGAGGGCAGGTGGTGAAGGTGATC
CGGCCCAGCGAGACTGCCGACAGGTACATCACCTACCGGCTGGTGCAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQE
QTLEEFK.QFGDK.SEGRP..TDL..LVAH.DDPTDQMFVFFPEEPKVGIKTIKVYCQ.MQEENI.R.LIVVQQGMT.SAKQSLVDM.PK.VLEQFLQQE
Retrocopy
QTLEEFKVQFGDKSSEGRPQHTDLMELVAHKDDPTDQMFVFFPEEPKVGIKTIKVYCQWMQEENIKRTLIVVQQGMTTSAKQSLVDMVPKNVLEQFLQQE


Parental protein
LLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKVIRPSETAGRYITYRLVQ
LLIN.TE.ELVPE.V.MTKEEVTELLARYKL.ENQLPRIQ.GDPVARYF.IKRGQVVKVIRPSETA.RYITYRLVQ
Retrocopy
LLINFTEQELVPEYVIMTKEEVTELLARYKLQENQLPRIQTGDPVARYFEIKRGQVVKVIRPSETADRYITYRLVQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide