RetrogeneDB ID:
retro_mputfur_153
Organism:
Location:
GL897057.1:4140996-4141779 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.75 %
Coverage:
99.62 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
Nsa2
Parental gene aliases:
No gene alias available
Parental gene description:
NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913883]

Genomic region (view in browser)





>retro_mputfur_153
ATGCCACAAAATGAATATATTGAGTTACACCGGAAGCGCTATGGCTATCGTTTGGATTAC
CATGAGAAAAAGAGAAAGAAAGAAGGTGGAGAGGCTCATGAACGTTCAAAGAAGGCAAAA
AAGATGATTGGTCTGAAAGCTAAGCTCTACCATAAACAGCGCCATGCTGAGAAAATACAG
ATGAAAAAGACTATCAAGATGCATGAAAAGAGAAACACCAAACAAAAGAATGATGAAAAG
ACTCCACAAGGAGCAGTACCTGCATATCTACTGGACAGGGAGGGACAGTCTCAAGCTAAA
GTACTTTCTAATATGATTAAACAAAAACGAAAAGAGAAAGTGGGAAAATGGGAAGTTCCT
TTACCCAAAGTTCGAGCCCAGGGAGAAACAGAAGTATTAAAAGTTATTCGAACAGGAAAG
AGAAAGAAGAAAGCATGGAAAAGAATGGTCACTAAAGTCTACTTTGTTGGAGATGGCTTT
ACTCGAAAACCACCTAAATATGAAAGATTCATTAGGCCAATGGGCTTACATTTCAAAAAG
GCCCATGTAACACAACCTGAATTGAAAACCACCTTTTGCCTGCCAATACTTGATGTAAAA
AAAAATCCTTCATCCCCACTATATACAACTTTGGGTGTTATTACCAACGGTACTGTAATT
GACGTGAACGTGAGCGAGTTGGGCCTTGTGACACAAGGAGGCAAATTTATTTGGGGAAAA
TATGCCCAGGTTACCAACAATCCTGAAAATGATGGATGCATAAATGCAGTCCTGCTGGTT
TGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKV
PQNEYIELHRKRYGYRLDYHEKKRKKEG.EAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQS.AKV
Retrocopy
PQNEYIELHRKRYGYRLDYHEKKRKKEGGEAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSQAKV


Parental protein
LSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKK
LSNMIKQKRKEK.GKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKV.FVGDGFTRKPPKYERFIRPMGL.FKKAHVT.PELK.TFCLPIL.VKK
Retrocopy
LSNMIKQKRKEKVGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVYFVGDGFTRKPPKYERFIRPMGLHFKKAHVTQPELKTTFCLPILDVKK


Parental protein
NPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV
NPSSPLYTTLGVIT.GTVI.VNVSELGLVTQGGK.IWGKYAQVTNNPENDGCINAVLLV
Retrocopy
NPSSPLYTTLGVITNGTVIDVNVSELGLVTQGGKFIWGKYAQVTNNPENDGCINAVLLV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide